DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_CHLSC (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Chloranthus spicatus GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Liriodendron tulipifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.485e-14
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:  122 GIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 4.485e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_GOSHI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Gossypium hirsutum GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEH+LVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHILVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_DRIGR (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Drimys granadensis GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVL+LSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_COFAR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Coffea arabica GN=ndhG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 5.828e-14
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQI+EQDLI+NSQQIG+HLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQILEQDLITNSQQIGVHLSTDFFLPFE 157          

HSP 2 Score: 38.5058 bits (88), Expect = 5.828e-14
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI D SWYGIIWTT S
Sbjct:  110 SLITTIPDMSWYGIIWTTKS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_DIOEL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Dioscorea elephantipes GN=ndhG PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.828e-14
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLISN QQIGIHLST+F+LPFE
Sbjct:  122 GIIWTTRSNQIIEQDLISNVQQIGIHLSTNFYLPFE 157          

HSP 2 Score: 40.4318 bits (93), Expect = 5.828e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTIPDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_CHLSC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Chloranthus spicatus GN=ndhG PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.828e-14
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:  122 GIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157          

HSP 2 Score: 40.4318 bits (93), Expect = 5.828e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTIPDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_NANDO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nandina domestica GN=ndhG PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.828e-14
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLI+  QQ+GIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLINKGQQLGIHLSTDFFLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 5.828e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_CERDE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Ceratophyllum demersum GN=ndhG PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.828e-14
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDL SN QQ+GIHLSTDF+LPFE
Sbjct:  122 GIIWTTRSNQIIEQDLTSNVQQMGIHLSTDFYLPFE 157          

HSP 2 Score: 41.5874 bits (96), Expect = 5.828e-14
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTIL+TSWYGIIWTT S
Sbjct:  110 SLITTILETSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_DRANE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Draba nemorosa GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.572e-14
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:   58 RANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  128 RLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 37.3502 bits (85), Expect = 7.572e-14
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTT 56
            SLI+TILDTSWY +IWTT
Sbjct:  110 SLISTILDTSWYRVIWTT 127          
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU4LC_CHLSC3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU6C_LIRTU4.485e-1475.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU4LC_GOSHI4.779e-1495.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_DRIGR4.779e-1495.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU6C_COFAR5.828e-1472.22NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_DIOEL5.828e-1475.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CHLSC5.828e-1475.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NANDO5.828e-1472.22NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CERDE5.828e-1472.22NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_DRANE7.572e-1493.33NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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