DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_CAPBU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Capsella bursa-pastoris GN=ndhG PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.572e-14
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    + NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTKLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 37.7354 bits (86), Expect = 7.572e-14
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 3
Query:    6 LITTILDTSWYGIIWTT 56
            L++TILDTSWYG+IWTT
Sbjct:  111 LMSTILDTSWYGVIWTT 127          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ARATH (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Arabidopsis thaliana GN=ndhG PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.572e-14
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    + NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTKLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 37.7354 bits (86), Expect = 7.572e-14
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 3
Query:    6 LITTILDTSWYGIIWTT 56
            L++TILDTSWYG+IWTT
Sbjct:  111 LMSTILDTSWYGVIWTT 127          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_DRIGR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Drimys granadensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 7.572e-14
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+     +NQIIEQDLISN QQIGIHLSTDF+LPFE
Sbjct:  122 GIIWTTGSNQIIEQDLISNVQQIGIHLSTDFYLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 7.572e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTGS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_PANGI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Panax ginseng GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFS+G+YGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_LACSA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Lactuca sativa GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFS+G+YGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_HELAN (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Helianthus annuus GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFS+G+YGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_FAGEA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRN+ RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNLVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_DAUCA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Daucus carota GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFS+G+YGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSVGLYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_CARPA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Carica papaya GN=ndhE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MLLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_MANES (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Manihot esculenta GN=ndhG PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.838e-14
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    + NQIIEQDLISN QQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKTNQIIEQDLISNGQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 37.3502 bits (85), Expect = 9.838e-14
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTT 56
            SLIT I DTSWYGIIWTT
Sbjct:  110 SLITIIPDTSWYGIIWTT 127          
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU6C_CAPBU7.572e-1477.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ARATH7.572e-1477.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_DRIGR7.572e-1475.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU4LC_PANGI8.151e-1492.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_LACSA8.151e-1492.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_HELAN8.151e-1492.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_FAGEA8.151e-1495.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_DAUCA8.151e-1492.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_CARPA8.151e-1495.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU6C_MANES9.838e-1477.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
back to top