DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_TRACE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Trachelium caeruleum GN=ndhG PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.838e-14
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLI+NSQ+IGIHLSTDF +PFE
Sbjct:  122 GIIWTTKSNQIIEQDLINNSQEIGIHLSTDFLIPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 9.838e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTIPDTSWYGIIWTTKS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus GN=ndhG PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.838e-14
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQDLISNSQQIGI+LST FFLPFE
Sbjct:  122 GIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 9.838e-14
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI+DTSWYGIIWTT S
Sbjct:  110 SLMTTIVDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Piper cenocladum GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 9.838e-14
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQDL+SN QQIGIHL TDF LPFE
Sbjct:  122 GIIWTTRSNQIMEQDLLSNVQQIGIHLVTDFILPFE 157          

HSP 2 Score: 43.1282 bits (100), Expect = 9.838e-14
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_TOBAC (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nicotiana tabacum GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_SOLTU (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Solanum tuberosum GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_SOLLC (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Solanum lycopersicum GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_SOLBU (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Solanum bulbocastanum GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_PLAOC (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Platanus occidentalis GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_NICTO (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nicotiana tomentosiformis GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_NICSY (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nicotiana sylvestris GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU6C_TRACE9.838e-1469.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CUCSA9.838e-1475.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PIPCE9.838e-1469.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU4LC_TOBAC1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_SOLTU1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_SOLLC1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_SOLBU1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_PLAOC1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_NICTO1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_NICSY1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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