DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_EUCGG (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_BUXMI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Buxus microphylla GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVL AYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLGAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_ATRBE (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Atropa belladonna GN=ndhE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_SPIOL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Spinacia oleracea GN=ndhG PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.278e-13
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQI+EQDLI+ SQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQILEQDLINASQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.0466 bits (92), Expect = 1.278e-13
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLI+TIL+TSWYGIIWTT S
Sbjct:  110 SLISTILNTSWYGIIWTTKS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_PELHO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Pelargonium hortorum GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.661e-13
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIE+D ISNSQQ+GI LSTDFFLPFE
Sbjct:  122 GILWTTKSNQIIEKDFISNSQQLGILLSTDFFLPFE 157          

HSP 2 Score: 42.743 bits (99), Expect = 1.661e-13
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGI+WTT S
Sbjct:  110 SLITTILDTSWYGILWTTKS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_NANDO (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nandina domestica GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYL SIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLLSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_LIRTU (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Liriodendron tulipifera GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM EHVL+LSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMTEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_CERDE (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Ceratophyllum demersum GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEH LVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHELVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_OENPA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oenothera parviflora GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILN+V
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNSV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_OENEH (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILN+V
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNSV 41          
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU4LC_EUCGG1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_BUXMI1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_ATRBE1.065e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU6C_SPIOL1.278e-1372.22NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PELHO1.661e-1369.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU4LC_NANDO1.816e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_LIRTU1.816e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_CERDE1.816e-1395.12NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_OENPA2.372e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_OENEH2.372e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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