DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_OENBI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oenothera biennis GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILN+V
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNSV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_OENAR (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oenothera argillicola GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILN+V
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNSV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_JASNU (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Jasminum nudiflorum GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEH+LVLSAYLFSIGIYGLITSRNM RALMCLELI N+V
Sbjct:    1 MMLEHILVLSAYLFSIGIYGLITSRNMVRALMCLELIFNSV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_CUCSA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Cucumis sativus GN=ndhE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:  487 MLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MLEHVL++SAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MLEHVLIISAYLFSIGIYGLITSRNMVRALMCLELILNAV 40          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ACOCL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Acorus calamus GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 3.637e-13
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1
Query:   61 ANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            +NQI+EQDL SN QQIGIHLSTDF+LPFE
Sbjct:  129 SNQIVEQDLTSNVQQIGIHLSTDFYLPFE 157          

HSP 2 Score: 41.2022 bits (95), Expect = 3.637e-13
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIW T S
Sbjct:  110 SLITTILDTSWYGIIWNTGS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ACOAM (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Acorus americanus GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 3.637e-13
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1
Query:   61 ANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            +NQI+EQDL SN QQIGIHLSTDF+LPFE
Sbjct:  129 SNQIVEQDLTSNVQQIGIHLSTDFYLPFE 157          

HSP 2 Score: 41.2022 bits (95), Expect = 3.637e-13
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIW T S
Sbjct:  110 SLITTILDTSWYGIIWNTGS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_RANMC (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Ranunculus macranthus GN=ndhE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLS+YL SIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSSYLLSIGIYGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_PIPCE (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Piper cenocladum GN=ndhE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVL LSAYLFSIGI+GLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLFLSAYLFSIGIFGLITSRNMVRALMCLELILNAV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_OENGL (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oenothera glazioviana GN=ndhE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLSAYLFSIGIYGLITSRNM RALMCLEL+LN+V
Sbjct:    1 MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELLLNSV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_ACOCL (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Acorus calamus GN=ndhE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLE+VL LSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEYVLFLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41          
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU4LC_OENBI2.372e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_OENAR2.372e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_JASNU3.098e-1390.24NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_CUCSA3.098e-1392.50NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU6C_ACOCL3.637e-1382.76NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ACOAM3.637e-1382.76NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU4LC_RANMC4.046e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_PIPCE4.046e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_OENGL4.046e-1390.24NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_ACOCL6.901e-1392.68NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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