DR908607

Overview
NameDR908607
Unique NameDR908607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.620e-52
Identity = 98/126 (77.78%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   L PSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    5 NVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 3.422e-52
Identity = 98/126 (77.78%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE V+DHRAGKIVV L GRLNKCGVISPRFD  + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:    5 NVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 6.454e-51
Identity = 96/126 (76.19%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +VL  AL+ + NAEKR KRQV+IRP SKV IKFL+VM KHGYIGEFE VDDHR GKI+V LNGRLNKCGVISPRFDV + ++E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+VGGK+LGFF+
Sbjct:    5 NVLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 6.454e-51
Identity = 97/126 (76.98%), Postives = 109/126 (86.51%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +VL DALK + NAEKRGK QV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK LGFF+
Sbjct:    5 NVLADALKCINNAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKSLGFFF 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.916e-48
Identity = 92/126 (73.02%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVLND LKS+ NA +RGKRQV++RPSSKV++KFL VMQ+HGYIGEFE +DDHR GKI+V+LNGRLNK GVISPRF+V    IE W   LLPSR  G IVLTTS+GI+DHEEARRKNVGGK+LG+ Y
Sbjct:    5 SVLNDCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 6.679e-48
Identity = 91/126 (72.22%), Postives = 108/126 (85.71%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVLND L S+ NAE++GKRQV++RPSSKVI+KFL VM K  YIGEFE VDDHR+GKIV++L GR+NKCGVISPRFDV + EIE W + LLPSRQFG+IVLTTS GIMDH EA+ ++ GGK+LGFFY
Sbjct:    5 SVLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.724e-48
Identity = 90/126 (71.43%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVL D L ++ NAE+RG+RQV+IRPSSKVI+KFL VMQKHGYI EF  +DDHR+GKIV++LNGR+NKCGVISPRF+V +K+IE W  +LLPSRQ G IVLTTS GIM H EAR K+ GGK+LGFFY
Sbjct:    5 SVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.445e-34
Identity = 68/125 (54.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:    4 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C  ++ R DV  KEIE +T R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+VLGFFY
Sbjct:    5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33
Identity = 67/125 (53.60%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    4 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +LNDAL+++ NAEKRGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C  ++ R DV   EI  +T R LP+RQ+GYIV+TT  GI+DHEEA ++NVGG+VLGFF+
Sbjct:    5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 68/125 (54.40%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    4 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            VL++AL S+ NAE RG RQV+I PSSK+I   L VMQ++GY+GEFEYV D R GK VV+L GR+N  G I PRF V V E++ W  + LP+RQ G ++LTTS G++ H EAR   VGG ++ + Y
Sbjct:    6 VLSNALMSVKNAESRGDRQVIIWPSSKLIGNVLRVMQRYGYVGEFEYVYDGRGGKYVVQLLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130          
The following BLAST results are available for this feature:
BLAST of DR908607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS15A_PONAB2.620e-5277.7840S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15B_DROME3.422e-5277.7840S ribosomal protein S15Ab OS=Drosophila melanoga... [more]
RS15A_PARLI6.454e-5176.1940S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS15A_ICTPU6.454e-5176.9840S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS22_AGABI3.916e-4873.0240S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS15A_DICDI6.679e-4872.2240S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_SCHPO8.724e-4871.4340S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
R15A5_ARATH1.445e-3454.4040S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
R15A2_ARATH7.927e-3353.6040S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]
RS8_CALMQ6.710e-3254.4030S ribosomal protein S8P OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16735 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908607 ID=DR908607; Name=DR908607; organism=Citrus sinensis; type=EST; length=609bp
AGTGTTCTGAATGATGCTCTTAAGAGCATGTATAATGCCGAGAAAAGGGG
GAAGCGTCAGGTTATGATCAGACCATCCTCCAAGGTTATCATTAAGTTTC
TTCTGGTGATGCAAAAGCACGGGTACATTGGTGAGTTTGAGTATGTTGAT
GACCACAGAGCTGGTAAGATTGTGGTTGAACTGAATGGAAGATTGAACAA
ATGTGGGGTTATCAGTCCCCGTTTTGATGTTGGCGTCAAGGAGATTGAAG
GTTGGACTGCTAGGTTGCTTCCCTCAAGACAGTTTGGATACATTGTGCTG
ACAACTTCTGCTGGCATTATGGACCACGAAGAGGCGAGAAGGAAGAATGT
TGGTGGTAAAGTGCTTGGTTTTTTCTACTAGGCAAAGTTCATATTGAGAA
TGGGACTTGAGTTTTTTTTGTGTACTTTGGAAGAACTTGTTCACAAATGG
ATTAGCTTCTCTTTGTTTTACTTGATTTAATTATGCATTTTTAAACTCGG
ATTGGTACTTTTTAGTTGAAGAAAGATGATATTATGTGTTACACACATTT
ATCTCTTAGCAGTTGATTTGGTGATCAATTTTCCCAAGTTCTGTTAACAT
CTGATTGTG
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