DR908607

Overview
NameDR908607
Unique NameDR908607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 64/129 (49.61%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            + L++AL S+YN E R  +Q +I PSSK+I+  L VMQK GY+GEFEY+DD R GKI+V+L GR+NKCG I+PR+ +  +E   +  +  R LPS++ G I+++T  G+M H+EA R+  GG VLG+ Y
Sbjct:    5 NTLSNALSSLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIVLGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 63/124 (50.81%), Postives = 90/124 (72.58%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+NK G I PRF V V E E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:    7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 61/124 (49.19%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EAR K +GG+++ + Y
Sbjct:    7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.690e-31
Identity = 61/124 (49.19%), Postives = 90/124 (72.58%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N+E+ GKR++ I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+NK G I PRF V   E E W  R LP+ +FG ++++TS G+M H+EAR + +GG+++ + Y
Sbjct:    7 LANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30
Identity = 61/124 (49.19%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + NAE  GK   +I P+SK+I   L VMQ  GY+GEFE+VD+ +AG++ V+L G++NKCGV+ PRF VG  E+E W  R LP+R FG ++LTTS G+M H +A +  +GG++L + Y
Sbjct:    7 LANALSVIKNAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.819e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDV---GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL ++YN E R  +Q +I P+SK+II  L VMQK GYIGEFEY+DD RAGKI+V+L GR+NKCG ISPR+ +   G+  +  +  + LPS++ G I+++T  G+M H +  R+ +GG  LG+ Y
Sbjct:    7 LANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 60/124 (48.39%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L DA+ ++ NAE  GK + +I+P+SK+I   L VM   GYIGEFE++DD ++G   V+L GR+N+CGVI PRF + V E+E W  R LP+R FG ++L+TS G+M H +AR + +GG +L + Y
Sbjct:    6 LADAMSTIKNAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGGHLLAYVY 129          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L DAL  + NAE  GK    IRP+SK+I   L VM   GYIG+FE+V+D +AG   VEL GR+NKCG I PR+ VGV E E W  + LP++ FG ++LTT  G++   EAR  NVGG++L F Y
Sbjct:    7 LADALSIIKNAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQLLSFVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 62/124 (50.00%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N+EK GK +V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  KE E W  R LP+ +FG +V++TS G+M H+EA  K +GG+++ + Y
Sbjct:    7 LANALSHITNSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
The following BLAST results are available for this feature:
BLAST of DR908607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METS51.952e-3149.6130S ribosomal protein S8P OS=Metallosphaera sedula... [more]
RS8_PYRFU3.330e-3150.8130S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]
RS8_PYRAB4.350e-3149.1930S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
RS8_PYRHO9.690e-3149.1930S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
RS8_UNCMA2.159e-3049.1930S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_SULAC2.819e-3048.8230S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]
RS8_SULSO4.809e-3048.8230S ribosomal protein S8P OS=Sulfolobus solfataric... [more]
RS8_METTP4.809e-3048.3930S ribosomal protein S8P OS=Methanosaeta thermoph... [more]
RS8_METBU4.809e-3051.6130S ribosomal protein S8P OS=Methanococcoides burt... [more]
RS8_THESM6.281e-3050.0030S ribosomal protein S8P OS=Thermococcus sibiricu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16735 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908607 ID=DR908607; Name=DR908607; organism=Citrus sinensis; type=EST; length=609bp
AGTGTTCTGAATGATGCTCTTAAGAGCATGTATAATGCCGAGAAAAGGGG
GAAGCGTCAGGTTATGATCAGACCATCCTCCAAGGTTATCATTAAGTTTC
TTCTGGTGATGCAAAAGCACGGGTACATTGGTGAGTTTGAGTATGTTGAT
GACCACAGAGCTGGTAAGATTGTGGTTGAACTGAATGGAAGATTGAACAA
ATGTGGGGTTATCAGTCCCCGTTTTGATGTTGGCGTCAAGGAGATTGAAG
GTTGGACTGCTAGGTTGCTTCCCTCAAGACAGTTTGGATACATTGTGCTG
ACAACTTCTGCTGGCATTATGGACCACGAAGAGGCGAGAAGGAAGAATGT
TGGTGGTAAAGTGCTTGGTTTTTTCTACTAGGCAAAGTTCATATTGAGAA
TGGGACTTGAGTTTTTTTTGTGTACTTTGGAAGAACTTGTTCACAAATGG
ATTAGCTTCTCTTTGTTTTACTTGATTTAATTATGCATTTTTAAACTCGG
ATTGGTACTTTTTAGTTGAAGAAAGATGATATTATGTGTTACACACATTT
ATCTCTTAGCAGTTGATTTGGTGATCAATTTTCCCAAGTTCTGTTAACAT
CTGATTGTG
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