DR908607

Overview
NameDR908607
Unique NameDR908607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 60/124 (48.39%), Postives = 90/124 (72.58%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N+E+ GK++V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  K  E W  R LP+ +FG ++++TS G+M H+EAR K +GG+++ + Y
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULIN (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULIM (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULIL (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULIK (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULIA (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.27) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG  LG+ Y
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.071e-29
Identity = 56/126 (44.44%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            + + DA+ ++ NA   GK + ++ PSSK++   L +MQ  GYIG F+ +DD R G+  V L+GR+NKCG I+PR+ VG+ E+E W  R LP + FG ++L+TS G++ H +AR+  +GG++LGF Y
Sbjct:    5 NTIADAMSALKNAGDCGKPECILEPSSKLLGAMLRIMQDAGYIGSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.399e-29
Identity = 59/124 (47.58%), Postives = 90/124 (72.58%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N+E+ GK++V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  +E E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.399e-29
Identity = 61/125 (48.80%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    4 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +L++AL ++ NAE  GKRQV+I P +K+I   L V+Q++GY+GE EY+DD R GK VV+L G++N  G I PRF V  +EI  W  + LP+RQ G +V++TS G+M H EA+ K +GG +L + Y
Sbjct:    6 LLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130          
The following BLAST results are available for this feature:
BLAST of DR908607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_THEGJ6.281e-3048.3930S ribosomal protein S8P OS=Thermococcus gammatol... [more]
RS8_SULIY8.203e-3048.8230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIN8.203e-3048.8230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIM8.203e-3048.8230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIL8.203e-3048.8230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIK8.203e-3048.8230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIA8.203e-3048.8230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_METPE1.071e-2944.4430S ribosomal protein S8P OS=Methanosphaerula palu... [more]
RS8_THEON1.399e-2947.5830S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_PYRCJ1.399e-2948.8030S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16735 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908607 ID=DR908607; Name=DR908607; organism=Citrus sinensis; type=EST; length=609bp
AGTGTTCTGAATGATGCTCTTAAGAGCATGTATAATGCCGAGAAAAGGGG
GAAGCGTCAGGTTATGATCAGACCATCCTCCAAGGTTATCATTAAGTTTC
TTCTGGTGATGCAAAAGCACGGGTACATTGGTGAGTTTGAGTATGTTGAT
GACCACAGAGCTGGTAAGATTGTGGTTGAACTGAATGGAAGATTGAACAA
ATGTGGGGTTATCAGTCCCCGTTTTGATGTTGGCGTCAAGGAGATTGAAG
GTTGGACTGCTAGGTTGCTTCCCTCAAGACAGTTTGGATACATTGTGCTG
ACAACTTCTGCTGGCATTATGGACCACGAAGAGGCGAGAAGGAAGAATGT
TGGTGGTAAAGTGCTTGGTTTTTTCTACTAGGCAAAGTTCATATTGAGAA
TGGGACTTGAGTTTTTTTTGTGTACTTTGGAAGAACTTGTTCACAAATGG
ATTAGCTTCTCTTTGTTTTACTTGATTTAATTATGCATTTTTAAACTCGG
ATTGGTACTTTTTAGTTGAAGAAAGATGATATTATGTGTTACACACATTT
ATCTCTTAGCAGTTGATTTGGTGATCAATTTTCCCAAGTTCTGTTAACAT
CTGATTGTG
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