DR908607

Overview
NameDR908607
Unique NameDR908607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_SULTO (30S ribosomal protein S8P OS=Sulfolobus tokodaii GN=rps8p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.387e-29
Identity = 60/127 (47.24%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL ++YN E R  +Q +I P+SK+II  L  MQK GYIGEFE++DD R+GKIVV+L GR+NKCG I+PR+ +  K+   +  +  R LPS++ G ++++T+ G+M H++A R+ +GG  LG+ Y
Sbjct:    7 LANALTTIYNNEMRRNKQAIIMPASKLIINVLRAMQKEGYIGEFEFIDDGRSGKIVVQLLGRINKCGPIAPRYPLKYKDLLTLPDYVRRYLPSKEIGVLIISTNKGVMTHKDAIRERIGGVALGYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 60/125 (48.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    4 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +L++AL  + NAE  GKRQV I P +K+I   L V+Q+HGY+GE EY+DD R GK VV+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++T+ G+M H EA+ K +GG +L + Y
Sbjct:    6 LLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 60/124 (48.39%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N E+ GK+   I+P+SK+I + L VMQ HGYIGEFE+++D RAG   VEL G++NKCG I PR+ V   E E +  R LP+R FG ++++TS GIM H EA+ K +GG+++ + Y
Sbjct:    7 LANALNHLTNCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 58/122 (47.54%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   13 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            DA+ ++ NA   GK  V + P+S++    L VMQ++GYI  FE +DD R G+  + L+G +NKCGVI+PRF V V+++E W  R LP + FG I+LTTS G+M HE+AR+  VGG++LG+ +
Sbjct:    9 DAMSAIKNAGDTGKLAVTVEPASRLFGDMLKVMQEYGYITGFEKIDDGRGGQFQIALSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGELLGYVF 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.069e-29
Identity = 58/124 (46.77%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L DA+ ++ N E  G ++ +I P+SK+I + L VMQ++GYIG FE++DD R+GK +V+L GR+N CGVI PR  V   E E W  R LP+R FG +++TT  G+M H EA+ + +GG++L + Y
Sbjct:    7 LADAMATIKNNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.185e-28
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL ++ N E RGK+Q +I PSSK+I+  L  +++ GYIG+FE +DD R GKIVV L GR+NK GVI PR+ V   E E W    LPSR  G ++++T  G+M H EA+ K +GG +L + Y
Sbjct:    6 LANALSTIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.185e-28
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL ++ NAE  GK   +IRP+SK I   L VMQ  GYIGEFE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++L + Y
Sbjct:    7 LANALSTIKNAEAIGKSSCIIRPASKNIGNVLKVMQDLGYIGEFEFIDDGKAGIYSVTLVGRVNKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALIITTSSGVMSQYEAREKKIGGQLLAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.185e-28
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +A+ ++ NAE R K +V+I P+SK+I   L VMQ+ GYIGEFEY+DD R GKI V L GR+NK GVI PRF V  K++     W  + LPSR  G ++++TS G+M H EA ++ +GG +L + Y
Sbjct:    7 LANAMAAIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGGVLLAYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.547e-28
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL ++ N E RG  +  I P+SK+I + L  MQK GYIGEFEYVDD RAGK +VEL G +N CGVI PR  V   E E +  R LP++ FG I+++T  GIM H+EA+ + +GG++L + Y
Sbjct:    7 LANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 53/122 (43.44%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   13 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            DA+ ++ NA   GK +V++ P+SK++   L VMQ++G+I  FE++DD R G+  V+L+G +NKCG ISPRF V + ++E W ++ LP++ FG ++++TS G++ H EAR + +GG++LG+ Y
Sbjct:    9 DAMSTIKNAGDAGKGEVIVEPASKLLGAMLRVMQENGFISGFEFIDDGRGGQFRVQLSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQLLGYVY 130          
The following BLAST results are available for this feature:
BLAST of DR908607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_SULTO2.387e-2947.2430S ribosomal protein S8P OS=Sulfolobus tokodaii G... [more]
RS8_THENV5.317e-2948.0030S ribosomal protein S8P OS=Thermoproteus neutrop... [more]
RS8_METIG5.317e-2948.3930S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_METLZ6.944e-2947.5430S ribosomal protein S8P OS=Methanocorpusculum la... [more]
RS8_METKA9.069e-2946.7730S ribosomal protein S8P OS=Methanopyrus kandleri... [more]
RS8_THEPD1.185e-2848.3930S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_METBF1.185e-2849.1930S ribosomal protein S8P OS=Methanosarcina barker... [more]
RS8_HYPBU1.185e-2848.8230S ribosomal protein S8P OS=Hyperthermus butylicu... [more]
RS8_METTH1.547e-2850.0030S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_METMJ2.020e-2843.4430S ribosomal protein S8P OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16735 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908607 ID=DR908607; Name=DR908607; organism=Citrus sinensis; type=EST; length=609bp
AGTGTTCTGAATGATGCTCTTAAGAGCATGTATAATGCCGAGAAAAGGGG
GAAGCGTCAGGTTATGATCAGACCATCCTCCAAGGTTATCATTAAGTTTC
TTCTGGTGATGCAAAAGCACGGGTACATTGGTGAGTTTGAGTATGTTGAT
GACCACAGAGCTGGTAAGATTGTGGTTGAACTGAATGGAAGATTGAACAA
ATGTGGGGTTATCAGTCCCCGTTTTGATGTTGGCGTCAAGGAGATTGAAG
GTTGGACTGCTAGGTTGCTTCCCTCAAGACAGTTTGGATACATTGTGCTG
ACAACTTCTGCTGGCATTATGGACCACGAAGAGGCGAGAAGGAAGAATGT
TGGTGGTAAAGTGCTTGGTTTTTTCTACTAGGCAAAGTTCATATTGAGAA
TGGGACTTGAGTTTTTTTTGTGTACTTTGGAAGAACTTGTTCACAAATGG
ATTAGCTTCTCTTTGTTTTACTTGATTTAATTATGCATTTTTAAACTCGG
ATTGGTACTTTTTAGTTGAAGAAAGATGATATTATGTGTTACACACATTT
ATCTCTTAGCAGTTGATTTGGTGATCAATTTTCCCAAGTTCTGTTAACAT
CTGATTGTG
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