DR908607

Overview
NameDR908607
Unique NameDR908607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.038e-24
Identity = 48/122 (39.34%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   13 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            DA+ ++ NA   G+ + +++P+ ++I + L +M++ GYI E+  ++D R G+  V ++G +NKCG ISPR+ V + E+E W    LPS+  G ++++TS G+M H +ARR  VGG++LG+ Y
Sbjct:    9 DAMSTLKNASDTGRAECIVQPAGRLIGELLRIMKEAGYIKEYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGELLGYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.038e-24
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L+DAL  + NAE  G     + P+S ++   L V    GYI  FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.038e-24
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L+DAL  + NAE  G     + P+S ++   L V    GYI  FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.038e-24
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   13 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            +AL ++ NAE  G  +  + P+S  I   L V    GYI  F +VDD +AG+  VEL G +N+CG + PR+  G  E E W  R LP+R +G +V+TTS GIM H EAR + VGG+V+ + Y
Sbjct:    9 NALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_META3 (30S ribosomal protein S8P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps8p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.943e-24
Identity = 50/124 (40.32%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +AL  + N E+ GK    ++P+SK+I +   VMQ  GY+G FEY++D +AG   VEL G +NKCG + PR+ V   E E +  R LP++ FG ++++T  G+M H+EA+   +GG+++ + Y
Sbjct:    7 LANALNHLSNCERVGKDVAYVQPASKLIGRVFKVMQDKGYMGNFEYIEDGKAGIYKVELTGHINKCGAVRPRYAVKKTEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKSNGLGGRLISYIY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.957e-23
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            ++L +   ++YN E R +    + P+SK+ ++ L  ++K GYIGEFE+V+D R GK  V L  ++ KCG ISPRF V   E   W  + LPS   G +V+TT+ G+M H EA  + +GG ++G+ Y
Sbjct:    5 NILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGGFLIGYVY 130          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.556e-23
Identity = 55/127 (43.31%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARL---LPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            L +A+ ++ NAE RGK + +I PSSK+I   L +++K GYIG FEY+DD R GK  V+L GR+N  GV+ PR  V  +E+      L   L SR  G ++L+T  G+M H EA ++ +GG V+ + Y
Sbjct:    7 LANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREALKRKIGGIVIAYVY 133          
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS8_NANEQ (30S ribosomal protein S8P OS=Nanoarchaeum equitans GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.575e-17
Identity = 41/125 (32.80%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    4 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            ++ D L  + N  ++G+ +    P S +IIK + +M++ GYI  +  VD  R   I +EL+   N+   I PRF V   E+E +  R LP+  FG ++L+TS G++ + EA+ + +GG ++ + Y
Sbjct:    5 IVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIELSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGGVLIAYVY 129          
The following BLAST results are available for this feature:
BLAST of DR908607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METHJ1.038e-2439.3430S ribosomal protein S8P OS=Methanospirillum hung... [more]
RS8_HALSA1.038e-2443.5530S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALS31.038e-2443.5530S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALMA1.038e-2444.2630S ribosomal protein S8P OS=Haloarcula marismortu... [more]
RS8_META33.943e-2440.3230S ribosomal protein S8P OS=Methanococcus aeolicu... [more]
RS8_CENSY1.957e-2340.4830S ribosomal protein S8P OS=Cenarchaeum symbiosum... [more]
RS8_AERPE2.556e-2343.3130S ribosomal protein S8P OS=Aeropyrum pernix GN=r... [more]
RS8_NANEQ3.575e-1732.8030S ribosomal protein S8P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16735 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908607 ID=DR908607; Name=DR908607; organism=Citrus sinensis; type=EST; length=609bp
AGTGTTCTGAATGATGCTCTTAAGAGCATGTATAATGCCGAGAAAAGGGG
GAAGCGTCAGGTTATGATCAGACCATCCTCCAAGGTTATCATTAAGTTTC
TTCTGGTGATGCAAAAGCACGGGTACATTGGTGAGTTTGAGTATGTTGAT
GACCACAGAGCTGGTAAGATTGTGGTTGAACTGAATGGAAGATTGAACAA
ATGTGGGGTTATCAGTCCCCGTTTTGATGTTGGCGTCAAGGAGATTGAAG
GTTGGACTGCTAGGTTGCTTCCCTCAAGACAGTTTGGATACATTGTGCTG
ACAACTTCTGCTGGCATTATGGACCACGAAGAGGCGAGAAGGAAGAATGT
TGGTGGTAAAGTGCTTGGTTTTTTCTACTAGGCAAAGTTCATATTGAGAA
TGGGACTTGAGTTTTTTTTGTGTACTTTGGAAGAACTTGTTCACAAATGG
ATTAGCTTCTCTTTGTTTTACTTGATTTAATTATGCATTTTTAAACTCGG
ATTGGTACTTTTTAGTTGAAGAAAGATGATATTATGTGTTACACACATTT
ATCTCTTAGCAGTTGATTTGGTGATCAATTTTCCCAAGTTCTGTTAACAT
CTGATTGTG
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