DR908604

Overview
NameDR908604
Unique NameDR908604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908604 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.943e-24
Identity = 52/146 (35.62%), Postives = 89/146 (60.96%), Query Frame = 1
Query:    1 GVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGE 438
            GVD+N  +F +A++ G TE +NP+D  KP+Q+V+ +MT+ G+D   E  G++  + +A    ++ +GV V+VGV       K       + R+LKG+ FG +K R  +P +V  YM +++ L+  ITH +   +IN+A +LM +G+
Sbjct:  222 GVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGVLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAEKLNLDPLITHTLNLDKINEAVELMKTGK 367          
BLAST of DR908604 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 42/153 (27.45%), Postives = 75/153 (49.02%), Query Frame = 1
Query:    4 VDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIAEMTNG-GVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNER-TLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 456
            VD +  +   A + G T  VN  + D  V + +  +T G G D  ++  G  +    AF    D  G  VLVGVP  D   +   ++  +    LK +++G+  P  D P +++ ++   + L+KF+T  +   ++ KAF  M +GE +R ++
Sbjct:  209 VDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVGRPETWKQAFYA-RDLAGTVVLVGVPTPDMRLEMPLLDFFSRGGALKSSWYGDCLPERDFPVLIDLHLQGRLPLDKFVTERISLDDVEKAFHTMHAGEVLRSVV 358          
The following BLAST results are available for this feature:
BLAST of DR908604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ADH6_HUMAN3.943e-2435.62Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
FADH_AMYME3.828e-1127.45NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16732 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-10_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908604 ID=DR908604; Name=DR908604; organism=Citrus sinensis; type=EST; length=609bp
GGTGTTGATTTGAACCCAAGCAGATTCAATGAAGCCAAGAAGTTTGGGGT
TACCGAGTTTGTGAATCCAAAAGATTATGACAAACCTGTTCAACAGGTGA
TTGCTGAAATGACCAATGGTGGAGTGGATAGAAGTGTTGAATGTACTGGA
AGCGTCCAGGCCATGATCTCAGCATTTGAATGCGTTCACGATGGTTGGGG
TGTTGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTC
ATCCCATGAATCTGCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGC
AACTACAAACCTCGCTCTGATCTTCCTTCAGTTGTTGAAAAATACATGAA
CAAGGAGATGGAGCTTGAGAAATTCATCACTCATGCTGTGCCCTTCTCGG
AGATAAACAAGGCATTTGACCTCATGCTTTCGGGAGAAAGCATTAGGTGC
ATCATTCGCATGGATGGTTAGATGTGTCTGCTGTTGCTGATCAATCTAAT
GGAGGCAGAATGAAGATGATCACATAATTTTCCAAGTTATATATTACCCC
GAGAATAAGTAATTTATGCTGTATGTTTGATGACTTGCTGCGAATGGCTT
TCAAAGAGT
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