DR908600

Overview
NameDR908600
Unique NameDR908600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF1_HEVBR (Profilin-1 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.223e-62
Identity = 110/131 (83.97%), Postives = 122/131 (93.13%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQ YVD+ L+CEIEGNHL+AAAIIG DGSVWAQS NFPQ K EEIT IM+DF+EPGTLAPTGL+LGGTKYMVIQGE GAVIRGKKGPGGVT++KT+ ALIIGIYDEPMTPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDERLMCEIEGNHLTAAAIIGQDGSVWAQSSNFPQFKSEEITAIMSDFDEPGTLAPTGLHLGGTKYMVIQGEAGAVIRGKKGPGGVTVRKTNQALIIGIYDEPMTPGQCNMIVERLGDYLLEQGM 131          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 8.127e-62
Identity = 106/131 (80.92%), Postives = 119/131 (90.84%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQ YVDDHL+C+++G HL+A+AI+GHDGS+WAQS  FPQ KPEEITGIMNDF EPG+LAPTGLYL G KYMVIQGEPGAVIRGKKG GGVTIKKT  ALI GIY+EPMTPGQCNM+VER+GDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCDVDGQHLTASAIVGHDGSIWAQSAGFPQFKPEEITGIMNDFAEPGSLAPTGLYLAGMKYMVIQGEPGAVIRGKKGSGGVTIKKTGQALIFGIYEEPMTPGQCNMVVERMGDYLVDQGL 131          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_ANACO (Profilin OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.061e-61
Identity = 105/130 (80.77%), Postives = 120/130 (92.31%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQAYVDDHL+CEI+G HLS+AAI+GHD +VWAQS NFPQ KPEEI+ I+NDF  PG+LAPTGLYLGGTKYMVIQGEPG VIRGKKG GG+T+KKT+ ALIIG+YDEPMTPGQCNM+VERLGDYL++QG
Sbjct:    1 MSWQAYVDDHLMCEIDGQHLSSAAILGHDSTVWAQSPNFPQFKPEEISAILNDFENPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKKGTGGITVKKTNLALIIGVYDEPMTPGQCNMVVERLGDYLLEQG 130          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_PYRCO (Profilin OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.386e-61
Identity = 108/131 (82.44%), Postives = 122/131 (93.13%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQAYVDDHL+C+I+G+HL+AAAI+GHDGSVWAQS  FP+ KPEEIT IM DF+EPG+LAPTGL+LGGTKYMVIQGE GAVIRGKKG GGVT+KKTS AL+ GIY+EP+TPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQAYVDDHLMCDIDGHHLTAAAILGHDGSVWAQSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTSQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF2_LILLO (Profilin-2 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.386e-61
Identity = 107/130 (82.31%), Postives = 121/130 (93.08%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQ YVD+HL+CEI+G HL+AAAIIGHDGS+WAQSE+FPQ+K E+ITG+MNDF EPG+LAPTGL+LG  KYMVIQGEPGAVIRGKKG GGVTIKKT+ ALI+GIYDEPMTPGQCNM+VERLGDYL DQG
Sbjct:    1 MSWQTYVDEHLMCEIDGQHLTAAAIIGHDGSIWAQSESFPQVKSEQITGVMNDFAEPGSLAPTGLFLGDNKYMVIQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_MUSAC (Profilin OS=Musa acuminata PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.811e-61
Identity = 110/130 (84.62%), Postives = 120/130 (92.31%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQAYVDDHLLC+I+G  L+AAAI+GHDGSVWAQS+ FPQ KPEEI  IM DF+EPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKG GGVTIKKT+ ALIIGIY+EPMTPGQCNM+VERLGDYL DQG
Sbjct:    1 MSWQAYVDDHLLCDIDGQCLTAAAIVGHDGSVWAQSDAFPQCKPEEIAAIMKDFDEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGSGGVTIKKTNLALIIGIYNEPMTPGQCNMVVERLGDYLFDQG 130          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF3_HEVBR (Profilin-3 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.365e-61
Identity = 105/131 (80.15%), Postives = 122/131 (93.13%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQ YVD+HL+C+I+G+HL+AAAIIGHDGSVWAQS +FPQ KPEE+  IM DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  ALIIGIYDEP+TPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF2_WHEAT (Profilin-2 OS=Triticum aestivum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.268e-61
Identity = 106/130 (81.54%), Postives = 118/130 (90.77%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQAYVDDHL CEI+G HL++AAI+GHDGSVWA+S NFP+ KPEEI GI+ DF EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT  ALI+GIYDEPMTPGQCN++VERLGDYLIDQG
Sbjct:    1 MSWQAYVDDHLCCEIDGQHLTSAAILGHDGSVWAESPNFPKFKPEEIAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMALILGIYDEPMTPGQCNLVVERLGDYLIDQG 130          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF2_PHLPR (Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.533e-60
Identity = 102/131 (77.86%), Postives = 121/131 (92.37%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQ YVD+HL+CEIEG+HL++AAI+GHDG+VWAQS +FPQ KPEEITGIM DF+EPG LAPTG+++ G KYMVIQGEPGAVIRGKKG GG+TIKKT  AL++GIYDEPMTPGQCNM+VERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLASAAILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_APIGR (Profilin OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.002e-60
Identity = 110/134 (82.09%), Postives = 119/134 (88.81%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNH---LSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQAYVDDHL+CE+EGN    L+AAAIIGHDGSVWAQS  FPQ+KPEEI GIM DF+EPG LAPTGLYLGG KYMVIQGEP AVIRGKKG GGVTIKKT  AL+ G+YDEP+TPGQCN+IVERLGDYLIDQGL
Sbjct:    1 MSWQAYVDDHLMCEVEGNPGQTLTAAAIIGHDGSVWAQSSTFPQIKPEEIAGIMKDFDEPGHLAPTGLYLGGAKYMVIQGEPNAVIRGKKGSGGVTIKKTGQALVFGVYDEPVTPGQCNVIVERLGDYLIDQGL 134          
The following BLAST results are available for this feature:
BLAST of DR908600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF1_HEVBR6.223e-6283.97Profilin-1 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_LILLO8.127e-6280.92Profilin-1 OS=Lilium longiflorum PE=2 SV=1[more]
PROF_ANACO1.061e-6180.77Profilin OS=Ananas comosus PE=1 SV=1[more]
PROF_PYRCO1.386e-6182.44Profilin OS=Pyrus communis PE=1 SV=1[more]
PROF2_LILLO1.386e-6182.31Profilin-2 OS=Lilium longiflorum PE=2 SV=1[more]
PROF_MUSAC1.811e-6184.62Profilin OS=Musa acuminata PE=1 SV=1[more]
PROF3_HEVBR2.365e-6180.15Profilin-3 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF2_WHEAT5.268e-6181.54Profilin-2 OS=Triticum aestivum GN=PRO2 PE=2 SV=1[more]
PROF2_PHLPR1.533e-6077.86Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1[more]
PROF_APIGR2.002e-6082.09Profilin OS=Apium graveolens PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16728 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908600 ID=DR908600; Name=DR908600; organism=Citrus sinensis; type=EST; length=610bp
GAAAAAGATGTCGTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAA
TTGAGGGTAACCATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGC
GTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAAC
TGGTATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAACTGGAC
TGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCT
GTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAG
TGCGGCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGT
GCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTT
TAGGTGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAA
AAGCTCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTT
ATGGGAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAGTTCTTG
ATATCAGCTATTTGTAGTATTGTTATGGTTGTCGAGGTACTTTACCAATC
ACTATTACAG
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