DR908600

Overview
NameDR908600
Unique NameDR908600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_HELAN (Profilin OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.095e-53
Identity = 93/133 (69.92%), Postives = 116/133 (87.22%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQAYVD+HL+C+IEG   HL++AAI+G DG+VWAQS  FPQ KPEE+ GI+ +F+E GTLAPTG+++ G KYMV+QGEPGAVIRGKKG GG+ IKKT  A+I+GIYDEP+ PGQCNM+VERLGDYL++QG+
Sbjct:    1 MSWQAYVDEHLMCDIEGTGQHLTSAAILGLDGTVWAQSAKFPQFKPEEMKGIIKEFDEAGTLAPTGMFIAGAKYMVLQGEPGAVIRGKKGAGGICIKKTGQAMIMGIYDEPVAPGQCNMVVERLGDYLLEQGM 133          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 4.470e-52
Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQ YVDDHL+C+IEG   HL++AAI G DG+VWA+S +FP+ KP EI  I+ +FNE G LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+ IKKT  A++ GIYDEP+ PGQCNM+VERLGDYL+DQG+
Sbjct:    1 MSWQTYVDDHLMCDIEGTGQHLTSAAIFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLLDQGM 133          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_BRABE (Profilin OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 400
            MSWQ YVD HL+       ++ AAI G DGS+WA+S    +L  +E+  +   F++   LA  G+ +GGTKY+ + G+   +IRGKK   GV I KT  A+++ +Y EP+ P QC ++VE+LGD+LI   L
Sbjct:    1 MSWQQYVDQHLVAT---QCVTMAAICGLDGSIWAKSNGL-ELSQDEVATLARSFSKDEVLAANGIRIGGTKYIYLSGDD-KLIRGKKDRQGVHIVKTKTAMVMALYAEPILPEQCAVVVEKLGDWLIQNDL 126          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF1_PHYPO (Profilin-A OS=Physarum polycephalum GN=PROA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 58/130 (44.62%), Postives = 83/130 (63.85%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQAYVDD L   +   H+  AAIIGHDG+VWA S+N   LK  E   I+N F +  ++   G+++ G KY+ I+ +  ++  GKKG GGV + KT  +++IG Y+E + PGQ   +VE+L DYL + G
Sbjct:    1 MSWQAYVDDQL---VGTGHVIGAAIIGHDGNVWA-SKNL-SLKAGEGAKIVNGFKDSASVLSGGIFVDGQKYLTIKADDKSIY-GKKGAGGVVLVKTGQSVLIGHYNETIQPGQATTVVEKLADYLRENG 124          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF1_DICDI (Profilin-1 OS=Dictyostelium discoideum GN=proA PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIG-HDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQ YVD+ L     G  LS  AI+G +DG VWA+S      KPE   GI   F  P  +   G  +GG KYM I+G+P ++  GKKG  G  + +T  A+I+GIYD+ + PG   +IVE+LGDYL D G
Sbjct:    1 MSWQQYVDEQLT----GAGLSQGAILGANDGGVWAKSSGINITKPEG-DGIAALFKNPAEVFAKGALIGGVKYMGIKGDPQSIY-GKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNG 125          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF2_ACACA (Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQ YVD +L   +    ++ AAIIGHDG+ WA S  F  + P     + N F +   +   G  L GT+Y+ I+ +  +V  GKKG  GV   KTS A++IG+Y+E + PG    +VE+L DYLI QG
Sbjct:    1 MSWQTYVDTNL---VGTGAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_DROME (Profilin OS=Drosophila melanogaster GN=chic PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQ YVD+ LL       ++ A I GHDG++WAQS  F   K EE++ +++ F++   L   G+ L G +Y+ + G    V+R K G  GV   KT+ A+I+ IY++P+ P Q   +VE+LGDYLI  G
Sbjct:    1 MSWQDYVDNQLLAS---QCVTKACIAGHDGNIWAQSSGFEVTK-EELSKLISGFDQQDGLTSNGVTLAGQRYIYLSGTD-RVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLITCG 125          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_BOMMO (Profilin OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MSWQ YVD  L+       ++ AAI GHDG+VWA+SE F ++  +E+  I+  F     L   G+ + GT+Y+ + G    +IR K G  GV   KT  A++I +Y+EP+ P Q   +VE+LG+YLI  G
Sbjct:    1 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 125          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF_APIME (Profilin OS=Apis mellifera PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 397
            MS Q YVD  LL       ++ AAI GHDG++WA+SE F ++  EE+T ++  F E   L  +G+ L G +Y+ + G    VIR K G  GV   KT+ A+++ +Y++P+ P Q   +VE+LGDYL+  G
Sbjct:    1 MSCQDYVDKQLLAS---RCVTKAAIAGHDGNLWAKSEGF-EVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD-RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCG 125          
BLAST of DR908600 vs. ExPASy Swiss-Prot
Match: PROF2_DICDI (Profilin-2 OS=Dictyostelium discoideum GN=proB PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 2
Query:    8 MSWQAYVDDHLLCEIEGNHLSAAAIIGH-DGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLID 391
            M+WQAYVD++LL    G   ++AA++G  DGSVWA S  F   + + IT +   F + G    TG+++ G KYM I+ +  +   GK G GGV   KT   +I+ +YD+ + PG    I E+L DYLID
Sbjct:    1 MTWQAYVDNNLL----GAGFASAALLGAADGSVWAHSAGFNVAEGKAITAL---FQKDGAAFATGIHVAGKKYMAIKSDTRSAY-GKLGAGGVVCVKTLTCIIVAVYDDKLQPGAAANIAEKLADYLID 121          
The following BLAST results are available for this feature:
BLAST of DR908600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF_HELAN3.095e-5369.92Profilin OS=Helianthus annuus PE=1 SV=1[more]
PROF1_ARTVU4.470e-5269.92Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF_BRABE4.360e-2342.75Profilin OS=Branchiostoma belcheri PE=2 SV=1[more]
PROF1_PHYPO4.360e-2344.62Profilin-A OS=Physarum polycephalum GN=PROA PE=3 S... [more]
PROF1_DICDI2.826e-2245.80Profilin-1 OS=Dictyostelium discoideum GN=proA PE=... [more]
PROF2_ACACA4.081e-2142.31Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3[more]
PROF_DROME5.329e-2141.54Profilin OS=Drosophila melanogaster GN=chic PE=1 S... [more]
PROF_BOMMO2.645e-2040.77Profilin OS=Bombyx mori PE=2 SV=1[more]
PROF_APIME3.454e-2040.77Profilin OS=Apis mellifera PE=2 SV=1[more]
PROF2_DICDI8.508e-1941.09Profilin-2 OS=Dictyostelium discoideum GN=proB PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16728 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908600 ID=DR908600; Name=DR908600; organism=Citrus sinensis; type=EST; length=610bp
GAAAAAGATGTCGTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAA
TTGAGGGTAACCATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGC
GTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAAC
TGGTATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAACTGGAC
TGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCT
GTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAG
TGCGGCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGT
GCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTT
TAGGTGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAA
AAGCTCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTT
ATGGGAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAGTTCTTG
ATATCAGCTATTTGTAGTATTGTTATGGTTGTCGAGGTACTTTACCAATC
ACTATTACAG
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