DR908596

Overview
NameDR908596
Unique NameDR908596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 95/194 (48.97%), Postives = 114/194 (58.76%), Query Frame = 2
Query:    5 GELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYCLTT 586
            G L  II   MFDD+L+YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC +                              NYNY  C             P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGY + T
Sbjct:   83 GYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLL--QEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVIT 244          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.724e-48
Identity = 98/197 (49.75%), Postives = 125/197 (63.45%), Query Frame = 2
Query:   11 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEV----SPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYCLTT 586
            +G +I++ +F+ +L  R++ +CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF QT HETTGG   +   ++ WGYCF  E+    SPP             YYGRGPIQL+   NY               NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGY + T
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNALGLDLV--GNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVIT 212          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.052e-45
Identity = 93/202 (46.04%), Postives = 126/202 (62.38%), Query Frame = 2
Query:    2 GGELG--KIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYCLTT 586
            GG  G   +++ + F+ +L +R+D  CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGY LTT
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTT 284          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.052e-45
Identity = 93/202 (46.04%), Postives = 126/202 (62.38%), Query Frame = 2
Query:    2 GGELG--KIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYCLTT 586
            GG  G   +++ + F+ +L +R+D  CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGY LTT
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTT 284          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.882e-42
Identity = 89/192 (46.35%), Postives = 114/192 (59.38%), Query Frame = 2
Query:   11 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYCLTT 586
            +  +IS  +F+ +L +R        GFYTYDAFI AA++FP F  +G+  +RKRE+AAF AQT HETTGGWP AP G Y        E+   SD           Y+GRGPIQ+S+NYNY               NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGY + T
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD-----------YFGRGPIQISYNYNY--GAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLT 163          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.766e-32
Identity = 68/172 (39.53%), Postives = 104/172 (60.47%), Query Frame = 2
Query:   20 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVS-PPSDYC-DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 523
            +++  +FD +  +R D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF A     T+G   D     +AWG C I+  +   +D+C   ++PC    KY  RGPIQL+ N+NY               NPDL+  DP++SFK+A+WFWM+    KPSCH+++++
Sbjct:  133 VVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN 299          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 60/166 (36.14%), Postives = 90/166 (54.22%), Query Frame = 2
Query:    2 GGELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP---NYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTA 484
            G  +  +++   F+ + + +    C  + FYT  AF+ A + +PGF + G++   KREIAAFFA   HET               +C+ISE++  + YCDP    +PC    KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM +
Sbjct:   66 GANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.186e-26
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 2
Query:   11 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD---PNYPC-RGK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFW 475
            +  I++ E F  L+  + D+ C A+GFYT DAF+ AA  +P FG +G+    KREIAAFFA   HET               +C+I E+  PS +YCD     +PC  GK YYGRGP+Q+SWN+NY               +PD +A  PVL+F++A+W+W
Sbjct:   68 VASIVTPEFFAALVA-QADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.226e-25
Identity = 66/170 (38.82%), Postives = 93/170 (54.71%), Query Frame = 2
Query:    2 GGELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP 493
            GG +G I+++  F+ ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P
Sbjct:   69 GGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of DR908596 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.091e-25
Identity = 61/164 (37.20%), Postives = 89/164 (54.27%), Query Frame = 2
Query:    2 GGELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 478
            G  +  +++   F+ + + +    C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +C+ISE++  + YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM
Sbjct:   77 GANVANVVTDAFFNGI-KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
The following BLAST results are available for this feature:
BLAST of DR908596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_POPTR1.346e-4848.97Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI8_ORYSJ8.724e-4849.75Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ4.052e-4546.04Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.052e-4546.04Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA1.882e-4246.35Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.766e-3239.53Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIB_MAIZE4.213e-2636.14Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ7.186e-2640.99Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA1.226e-2538.82Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIA_MAIZE2.091e-2537.20Endochitinase A OS=Zea mays PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16724 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908596 ID=DR908596; Name=DR908596; organism=Citrus sinensis; type=EST; length=610bp
TGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGC
TTGAGTATAGAAATGATGAACGATGCCCTGCCAGAGGCTTCTACACTTAT
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGCGTAAAAGAGAAATCGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCT
TGGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGA
TCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAAC
TCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGA
GAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATC
ATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCAT
CGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTA
AACGCCGGCCGGCTTCCGGGATACTGTCTAACCACAATATAATCAACGGT
GGATTGAATG
back to top