DR908591

Overview
NameDR908591
Unique NameDR908591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908591 vs. ExPASy Swiss-Prot
Match: MIF_PIG (Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 2 
Query:   71 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 415
            MP   ++TNV    V     LSE T  +   +GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFVVNTNVPRASVP-DGFLSELTQQLVQAMGKPAQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114
[Close]
BLAST of DR908591 vs. ExPASy Swiss-Prot
Match: MIF_SHEEP (Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 2 
Query:   71 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 415
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:    1 MPMFVVNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114
[Close]
BLAST of DR908591 vs. ExPASy Swiss-Prot
Match: MIF_BOVIN (Macrophage migration inhibitory factor OS=Bos taurus GN=MIF PE=1 SV=6)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 2 
Query:   71 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 415
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:    1 MPMFVVNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114
[Close]
BLAST of DR908591 vs. ExPASy Swiss-Prot
Match: MIF_MACMU (Macrophage migration inhibitory factor OS=Macaca mulatta GN=MIF PE=3 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 2 
Query:   71 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 415
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
[Close]
BLAST of DR908591 vs. ExPASy Swiss-Prot
Match: MIF_MACFA (Macrophage migration inhibitory factor OS=Macaca fascicularis GN=MIF PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 2 
Query:   71 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 415
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
[Close]
BLAST of DR908591 vs. ExPASy Swiss-Prot
Match: MIF_HUMAN (Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 2 
Query:   71 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 415
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
The following BLAST results are available for this feature:
BLAST of DR908591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIF_PIG6.310e-1434.78Macrophage migration inhibitory factor OS=Sus scro... [more]
MIF_SHEEP1.076e-1335.65Macrophage migration inhibitory factor OS=Ovis ari... [more]
MIF_BOVIN1.076e-1335.65Macrophage migration inhibitory factor OS=Bos taur... [more]
MIF_MACMU2.398e-1334.78Macrophage migration inhibitory factor OS=Macaca m... [more]
MIF_MACFA2.398e-1334.78Macrophage migration inhibitory factor OS=Macaca f... [more]
MIF_HUMAN2.398e-1334.78Macrophage migration inhibitory factor OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16719 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-20_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908591 ID=DR908591; Name=DR908591; organism=Citrus sinensis; type=EST; length=611bp
AGAAAGAAAGAAAGAGAGTGGTTAGGGGGAAGCTCCAAGAGTAGGGTTTT
CCGTCGGAAGTTTCGAGAAGATGCCTTGCTTGAACATTTCAACTAACGTC
AAACTCGATGGCGTTGACACGTCATCCATCCTCTCCGAGGCCACCTCCAC
TGTCGCCAACATCATCGGCAAACCCGAGGCCTACGTGATGATTGTGTTGA
AGGGATCAGTACCTATGTCTTTTGGTGGAACTGAGGACCCGGCAGCTTAT
GGTGAGTTGGTGTCCATTGGTGGCCTTAACCCTGATGTGAACAAGAAGCT
GAGTGCTGCAATTTCTGCAATTCTTGAAAAGAAGCTGTCGGTACCCAAGT
CACGATTCTTCATCAAGTTTTATGACACAAAGGGTTCAAACTTTGGATGG
AATGGATCCACCTTCTAGATATTATTCTCAAAGCATGGCGCCATGAACTC
TGACAATTGTCTTATCTATATGGTGATTACAATCTTTAGAACAATGTTAA
TAATTGGCTGAATATTGGGTAATTTCTCCTATGATGTGTTTTCTTCTCGT
TGGTGCTAGCCAACAATATTGGGGAATAGGAACTGTTTGGTTTATGGAGT
AATATTACATT
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