DR908590

Overview
NameDR908590
Unique NameDR908590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908590 vs. ExPASy Swiss-Prot
Match: MED10_DROME (Mediator of RNA polymerase II transcription subunit 10 OS=Drosophila melanogaster GN=MED10 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.832e-14
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  183 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKCNIQVPTEVL-NLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 518
            + Q+ + VS F    Q  L Q++NSLV+ L  + KL S+  ++ VP EV  + ID  KNP  +T+D +   +AKN+  KGK +  K  + +LL EL +TFP+E+  YR  R +S
Sbjct:   19 VRQIRIIVSDFQPQGQNVLNQKINSLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGLKKFKTNLLLELYKTFPNEMNNYRAYRKDS 132          
BLAST of DR908590 vs. ExPASy Swiss-Prot
Match: MED10_DICDI (Putative mediator of RNA polymerase II transcription subunit 10 OS=Dictyostelium discoideum GN=med10 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 32/124 (25.81%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  132 KQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYR 500
            KQ    ++ +V++ +  L +  + V  F   SQ  L  +LN +++  + +       N +++P E+  +ID  KNPD + ++ + +C++ N+ TKGK ++ K+ +K L   + ++F  E   Y+
Sbjct:   48 KQEHLPLLQTVEELVEELRRSLIVVEEFQTPSQQLLFDKLNKIINLYEKIESNRHIVNDVEIPLEIFRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIKNFKKELESHISESFASEYAEYK 171          
The following BLAST results are available for this feature:
BLAST of DR908590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MED10_DROME2.832e-1439.47Mediator of RNA polymerase II transcription subuni... [more]
MED10_DICDI1.007e-1125.81Putative mediator of RNA polymerase II transcripti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16718 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-15_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908590 ID=DR908590; Name=DR908590; organism=Citrus sinensis; type=EST; length=611bp
TGTAATTACAGTTTCTTGATACGAGAGAAAGAAAGATGGATGGACCGGTG
GGGGGCAGCAGAGCAAGTGGTGGCAATGGAATGGTGAGCAATCAAGCAAA
CGATACAACAACTGTGGCAGCTGACGATCCGAAGCAGAACTTGAACCAGG
TTATTAATTCAGTTCAGAAGACTCTTGGGCTCCTACATCAACTCTACCTT
ACCGTATCTTCCTTCAATGCTGCCTCCCAGCTCCCTCTCCTACAGAGACT
CAATTCTCTTGTTTCGGAGCTTGACAACATGGTTAAATTGTCTGAGAAGT
GCAATATTCAAGTGCCCACGGAAGTGCTTAATTTGATTGATGACGGAAAA
AATCCTGATGAATTCACAAGGGATGTTATAAACAGCTGCATTGCTAAAAA
CCAAGTCACCAAAGGAAAAACTGATGCTTTCAAGAGTTTACGAAAGCATC
TTTTGGACGAACTTGAGCAGACATTTCCAGATGAAGTTGAAGCATATAGA
GAGATACGTGCAAATTCTGCTGCTGAAGCAAAGCGTCTTGCTCAATCACA
AAGTATGTTACCAAATGGAGATGTGAAAGTTAATCTGAGCTTAAATGTCA
GTTTCATGCAG
back to top