DR908589

Overview
NameDR908589
Unique NameDR908589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908589 vs. ExPASy Swiss-Prot
Match: MLC1_DROVI (Myosin light chain alkali OS=Drosophila virilis GN=Mlc1 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   99 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 518
            ++   +  F +    G+G I   +LG  +R+L  NPT A ++ M           I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +F++ +M+
Sbjct:    8 EVENVEFVFEVMGSPGEG-IDAFDLGDALRALNLNPTLALIEKM-GGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMLLAELQHALLALGESLDDEQVENLFADCMDPEDDEGFIPYSQFIQRLMS 149          
BLAST of DR908589 vs. ExPASy Swiss-Prot
Match: MLC1_DROSI (Myosin light chain alkali OS=Drosophila simulans GN=Mlc1 PE=4 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   99 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 518
            ++   +  F +    G+G I   +LG  +R+L  NPT A L + +          I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +F++ +M+
Sbjct:    8 EVENVEFVFEVMGSPGEG-IDAVDLGDALRALNLNPTLA-LIEKLGGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMMLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFIQRLMS 149          
BLAST of DR908589 vs. ExPASy Swiss-Prot
Match: MLC1_DROME (Myosin light chain alkali OS=Drosophila melanogaster GN=Mlc1 PE=2 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   99 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 518
            ++   +  F +    G+G I   +LG  +R+L  NPT A L + +          I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +FV+ +M+
Sbjct:    8 EVENVEFVFEVMGSPGEG-IDAVDLGDALRALNLNPTLA-LIEKLGGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMLLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMS 149          
BLAST of DR908589 vs. ExPASy Swiss-Prot
Match: CML29_ORYSJ (Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  102 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDK--DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 500
            IS   EAF  FD D DG +T  EL  ++ SLG +  E E++DM+   DAD +G +   E L++M A ++        L+ A    +     +G + A EL  +++ +G   + E+  E+I   D DGDG I+ EEF
Sbjct:   29 ISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADADRDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGADELARLLSVMG-TASVEDCMEIIACMDGDGDGAISVEEF 163          
BLAST of DR908589 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 35/135 (25.93%), Postives = 74/135 (54.81%), Query Frame = 3
Query:   96 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 500
            +Q + ++  F   D++GDG +   EL   +R+LG    +   + +    D + +G +DF EF+  +       D E+++K AF+  DK+ +G I A+E+   +  LG  +++++ + +++  DVDG   +++ E+
Sbjct:   19 EQPTRYETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLK------DHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEW 147          
BLAST of DR908589 vs. ExPASy Swiss-Prot
Match: ACTN2_MOUSE (Alpha-actinin-2 OS=Mus musculus GN=Actn2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 35/106 (33.02%), Postives = 63/106 (59.43%), Query Frame = 3
Query:   78 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELR 395
            A  +T  Q++EF+ +F+ FD+  +G +  ++    + S+G +  EAE   ++  VD +G GT+ F  F++ M R+  DTD+ E++  +FR+   D+  +I A ELR
Sbjct:  747 AKGITQKQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDK-PYILAEELR 851          
The following BLAST results are available for this feature:
BLAST of DR908589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 486
Match NameE-valueIdentityDescription
MLC1_DROVI6.530e-1129.17Myosin light chain alkali OS=Drosophila virilis GN... [more]
MLC1_DROSI6.530e-1129.17Myosin light chain alkali OS=Drosophila simulans G... [more]
MLC1_DROME6.530e-1129.86Myosin light chain alkali OS=Drosophila melanogast... [more]
CML29_ORYSJ6.530e-1134.56Probable calcium-binding protein CML29 OS=Oryza sa... [more]
SCMC1_HUMAN8.528e-1125.93Calcium-binding mitochondrial carrier protein SCaM... [more]
ACTN2_MOUSE8.528e-1133.02Alpha-actinin-2 OS=Mus musculus GN=Actn2 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16717 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-12_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908589 ID=DR908589; Name=DR908589; organism=Citrus sinensis; type=EST; length=611bp
GCTCTTGGATTTTTGTAACGAAAAAAAAAATAAATACCTATTTCTGAGTT
GAAAAAACAAACGGAAGAAGAAAAATGGCGGATCAGCTCACGGACGATCA
GATCTCTGAGTTCAAAGAGGCCTTCAGCTTGTTTGACAAGGATGGCGACG
GTTGCATTACCACCAAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAG
AACCCCACTGAGGCTGAGCTCCAGGACATGATCAATGAAGTGGATGCTGA
TGGCAATGGAACTATTGATTTTCCTGAATTCCTAAACCTCATGGCCAGGA
AGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTT
TTCGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAGCTGCGCCATGT
GATGACAAACCTAGGAGAGAAACTTACTGATGAAGAAGTTGATGAGATGA
TAAGGGAAGCTGATGTTGATGGTGATGGCCAAATAAATTATGAGGAATTT
GTCAAGGTTATGATGGCCAAGTAATGACCCCAACCCACCAATACTTATAA
AATGGGTTGACTAAATTATAAAGGGATTCCTAGTTTTCTCTTTTACAATT
TTTAATTTGAT
back to top