DR908584

Overview
NameDR908584
Unique NameDR908584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_DICDI (Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.802e-35
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 2
Query:   86 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 376
            +++KREL FKE+GQEYAQVLRMLGNGR EA C DG KRLCHI G++ KK WI  GDIIL+ LRDYQ+DKADVIL+Y  DEAR LK YGELPE+ R+N
Sbjct:   19 NEQKRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDEARNLKTYGELPETARIN 115          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_YEAST (Eukaryotic translation initiation factor 1A OS=Saccharomyces cerevisiae GN=TIF11 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.035e-32
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 2
Query:   80 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 376
            ++D  KREL++KE+GQEYAQ+ +MLGNGR EA C DG KR+ HIRGK+ KKVW+  GDIILV LRD+QDD+ DV+ KY  DEAR LK  GELPE+ ++N
Sbjct:   18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKIN 116          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_SCHPO (Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe GN=tif11 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 65/99 (65.66%), Postives = 78/99 (78.79%), Query Frame = 2
Query:   80 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 376
            E ++EKREL + E+GQ YAQV +MLGNGR EA C DG KRL HIRGK+ KKVWI  GDIIL+ LR++QD+K DVILKY  DEAR LK  GELPE+ ++N
Sbjct:   18 ENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKIN 116          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_NATPD (Translation initiation factor 1A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 2
Query:   83 ADDEKRELVFKEDGQE-YAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPES 364
            +D+E R+ +   +G E +A V  MLG  R +  C+DGT+R   I G+M K++WI   D++LV   D+QD+KADV+ +Y   EA  L+  G + +S
Sbjct:    2 SDNEGRKNLRMPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIREDDVVLVEPWDWQDEKADVVWRYEKQEADQLREEGHITDS 96          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_HALMA (Translation initiation factor 1A OS=Haloarcula marismortui GN=eif1a PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 2
Query:   86 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 361
            +D ++ L   E+ + +A V+ MLG  R +  C+DG +R   I GKM K++WI   D++LV   D+QD+KAD+  +Y   +A  L+  G + E
Sbjct:    4 NDSRKNLRMPEEDEVFAVVMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIREDDVVLVEPWDWQDEKADITWRYEKQDADQLREEGHIQE 95          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_SULIY (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   98 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 337
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_SULIN (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   98 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 337
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_SULIM (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   98 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 337
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_SULIL (Translation initiation factor 1A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   98 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 337
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR908584 vs. ExPASy Swiss-Prot
Match: IF1A_SULIK (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   98 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 337
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
The following BLAST results are available for this feature:
BLAST of DR908584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF1A_DICDI3.802e-3572.16Eukaryotic translation initiation factor 1A OS=Dic... [more]
IF1A_YEAST1.035e-3263.64Eukaryotic translation initiation factor 1A OS=Sac... [more]
IF1A_SCHPO6.710e-3265.66Eukaryotic translation initiation factor 1A OS=Sch... [more]
IF1A_NATPD1.836e-1340.00Translation initiation factor 1A OS=Natronomonas p... [more]
IF1A_HALMA5.342e-1336.96Translation initiation factor 1A OS=Haloarcula mar... [more]
IF1A_SULIY1.554e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIN1.554e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIM1.554e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIL1.554e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIK1.554e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16712 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-18_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908584 ID=DR908584; Name=DR908584; organism=Citrus sinensis; type=EST; length=612bp
CCACCTCTCCCCCAAAGAATCAGAAACCATGCCGAAGAATAAGGGAAAGG
GAGGAAAGAACAGGAAGAGGGGAAAGAATGAAGCTGACGACGAGAAGCGT
GAGCTTGTCTTCAAGGAAGACGGACAGGAATATGCCCAAGTCCTTCGTAT
GCTCGGCAATGGTCGGTGTGAAGCTATGTGCATCGATGGAACCAAGCGTC
TTTGCCACATCCGTGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGT
GATATAATACTTGTTGGCCTACGTGATTATCAGGATGACAAGGCTGATGT
CATCCTCAAGTATATGCCCGACGAGGCAAGGCTTCTGAAGGCTTATGGTG
AACTTCCAGAGAGTACCCGTCTCAATGAGGGCATTGCTGGTGGTCTTGAT
GAAGAGGATGATGGCGCTGATAATGATTACATCGAGTTTGAAGACGAAGA
TATTGATAAGATCTAGGCTCCGAGAATCGACTCTGTCTGGGGTTTATGTT
CAATATTTAGCAAAAATGGAGTATGCCAATGTATTGGTTACTTAAAAGCT
GAAAATATGTGTTTGCAGCTTATATATTTGGAATTTTTAATGGTGAGCCT
GTCATATTTCGT
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