DR908577

Overview
NameDR908577
Unique NameDR908577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR21_ARATH (Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 1
Query:   49 TIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKAN--------RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 393
            T+V E+ D     +  C+        ++  GS CV  + S+ +  +   G  ++         KK K+ WT  LH  F+QA+  +G+D+A+P +IL  M V  LTR NVASHLQKYR+  R +
Sbjct:  159 TLVPEQADVLKTKRKNCSFKSDSRTVNSTNGS-CVSTDGSRKNRKRKPNGGPSDDGESMSQPAKKKKIQWTDSLHDLFLQAIRHIGLDKAVPKKILAFMSVPYLTRENVASHLQKYRIFLRRV 280          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  199 NKANRKKMKVDWTPELHKKFVQAVEQLGVD-QAIPSRILELMKVEGLTRHNVASHLQKYRMH 381
            + ++ KK +V W+ ELH KFV AV Q+G D +A P +IL+LM V  LTR NVASHLQKYR++
Sbjct:  187 SSSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLY 248          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: APRR4_ARATH (Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 39/116 (33.62%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   28 KPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCV---IENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 366
            K  R R ++V  E +   G K+           +  K S+C+   +    +      +C + A  KK +V W  ELH+ F+ AV+ LG+++A+P +IL++MKV+ ++R NVASHLQ
Sbjct:  159 KKMRERRSVVTGEAEKAAGEKSSSVGDSTIRNPNKSKRSSCLEAEVNEEDRHDHNDRACASSA--KKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272          
The following BLAST results are available for this feature:
BLAST of DR908577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ARR21_ARATH2.388e-1334.96Putative two-component response regulator ARR21 OS... [more]
ARR11_ARATH2.235e-1156.45Two-component response regulator ARR11 OS=Arabidop... [more]
APRR4_ARATH3.812e-1133.62Putative two-component response regulator-like APR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16705 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908577 ID=DR908577; Name=DR908577; organism=Citrus sinensis; type=EST; length=614bp
ATTGCTGAAGGAACATTACAGGAAGACAAACCTCAGAGACCAAGGGAAAC
TATAGTCAAAGAGGAGCATGACCCAACTAATGGTTCCAAGACTGAGTGCA
ACATGCTTCCTCTTCCGTACGAGAAAGATAATCTCAAAGGTTCTAATTGC
GTCATTGAAAACCCAAGTAAAGCTTCTGGTCTTCAGAACTCTTGCGGAAA
TAAAGCTAATCGAAAGAAGATGAAGGTGGACTGGACGCCTGAATTGCACA
AAAAATTTGTGCAGGCTGTGGAGCAACTTGGCGTAGATCAAGCCATTCCT
TCTCGGATACTAGAGCTGATGAAAGTGGAAGGACTGACTAGGCATAATGT
AGCAAGTCATCTCCAGAAATATCGAATGCATAGGAGACACATCTTACCCA
AAGAAGATGACCGAAAATGGCCACACGCAAGAGATCAAATGCTAAGGAAT
TATTATCCGCATAAACCTATAATGGCATTCCCGCCGTACCATTCTAATCA
CCTAGTCCCGACTGGTCCTGTCTATCCTGTCTGGGGAGCACCGAGTAATC
ACCTGGCTGCTGTCCAGATGTGGGCCCCACCTGGATATCCCCCATGGCAG
CAAGCAGAGAGTTG
back to top