DR908562

Overview
NameDR908562
Unique NameDR908562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERI 472
            STRV + +G+G    A+L + V   LA+  ++  G+++FC R V    F SD +V+  V ++ P+LS  I+ D L +V  G+ RGTG Q+IG  +++G+ Y+  +P+   +    N   KG+W G++  S         +   T+W +  + AR R+
Sbjct:  374 STRVGHLIGSGRANLARLCSRVAYSLALCISIFDGSLIFCFRDVWGSLFTSDPEVLAVVKDIFPILSLFIVTDGLNAVGGGLLRGTGKQYIGGLISIGSSYLFALPVTVFVVVYFNTGLKGIWCGMILSSVTAITCQFTVLFNTDWHRVLQEARHRL 530          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFE 478
            S RV + LGAGN + A+ +A VV+ +    A++ G +L   + V+AY F SD ++V  VS ++P+ S  ++ D+  +   G+ RG+G   +GA  +   YY++G+PL   L F   L   G W GI+     Q+I L I     +W++ +  A+ R  E
Sbjct:  331 SIRVGHGLGAGNTEQAKRSALVVLCMTELCALLSGILLATLKDVVAYIFTSDPNIVALVSYVLPVYSACLLFDACVAACGGILRGSGKLKVGAISHTVGYYVIGLPLGISLMFAAKLGIIGFWFGILACGIAQSIFLIIFVFKIDWKRASEEAQTRASE 489          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGK---GLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARER 469
            S RV+  LGAG P  A L A V  ++ V    ++   +   R +    F +D DV+  V+ ++PL++   I DSL   + G  RGTG Q +GA VN+ AYY+  +PL   L F     GK   GLWIG +   ++  I+   I + T+W  Q+R A  R
Sbjct:  289 SNRVAYYLGAGLPDNASLTAKVAAIVGVAVGSVIMITMIAVRNIYGRIFTNDPDVIQLVALVMPLVAAFQISDSLNGTMGGALRGTGRQKVGAIVNITAYYLFALPLGIYLAF----HGKGLVGLWIGQVIALSIVGILELKIVMATDWISQSRKAISR 443          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 49/153 (32.03%), Postives = 86/153 (56.21%), Query Frame = 2
Query:    8 RVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARE 466
            RV   LGA +   A+ +A   ++  V  ++++GT++   +  L + F +D+DV+  VS+++P+ S   + +++  V  GV RGTG Q  GA VN   YYI+G+PL  +L FV+ +R  GLW+G++    +        T   +W+  A  A++
Sbjct:  329 RVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGMLACVFLATAAFVAYTARLDWKLAAEEAKK 481          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A2_HUMAN (Multidrug and toxin extrusion protein 2 OS=Homo sapiens GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 49/153 (32.03%), Postives = 86/153 (56.21%), Query Frame = 2
Query:    8 RVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARE 466
            RV   LGA +   A+ +A   ++  V  ++++GT++   +  L + F +D+DV+  VS+++P+ S   + +++  V  GV RGTG Q  GA VN   YYI+G+PL  +L FV+ +R  GLW+G++    +        T   +W+  A  A++
Sbjct:  351 RVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGMLACVFLATAAFVAYTARLDWKLAAEEAKK 503          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: YD338_YEAST (Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae GN=YDR338C PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 48/148 (32.43%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRK 445
            STR++N +GA     A +++ V +  +     I   IL   R ++A  ++ D +V+  +++++PL+      DSL +V     RG G Q +G+ VNL AYY+ GIPLA +L +  +++  GLWIGI +   +  +V A   +  +W K
Sbjct:  511 STRIANFIGAKRTDFAHISSQVGLSFSFIAGFINCCILVFGRNLIANIYSKDPEVIKLIAQVLPLVGIVQNFDSLNAVAGSCLRGQGMQSLGSIVNLMAYYLFGIPLALILSWFFDMKLYGLWIGIGSAMLLIGLVEAYYVLFPDWDK 658          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: HMRM_HAEIN (Multidrug resistance protein hmrM OS=Haemophilus influenzae GN=hmrM PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 38/140 (27.14%), Postives = 69/140 (49.29%), Query Frame = 2
Query:   11 VSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVL----CFVLNLRGKGLWIGIMTGSAVQAIVLAI 418
            V   LGAG+PQ A+      ++L +T  ++   I    RY +A  F +D+ V+   + L+   +     D++Q V+ G+ RG     +  Y+ L +Y+++G+PL   L      V ++  KG WI  +      A +L++
Sbjct:  304 VGQALGAGSPQNAKKIGYAALLLGLTVTIVTALITIFFRYEIASIFVTDEIVIAMAANLLLFAALYQFSDTIQMVVGGILRGYKDTKVILYITLFSYWVIGVPLGYTLGRTDWLVPHIDAKGFWIAFVVSLTFAAFLLSL 443          
The following BLAST results are available for this feature:
BLAST of DR908562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
YL47_SCHPO1.195e-2031.85Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A1_XENTR1.561e-2033.33Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
YAO6_SCHPO1.726e-1935.85Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]
S47A2_PONAB1.461e-1832.03Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A2_HUMAN1.461e-1832.03Multidrug and toxin extrusion protein 2 OS=Homo sa... [more]
YD338_YEAST8.017e-1732.43Uncharacterized transporter YDR338C OS=Saccharomyc... [more]
HMRM_HAEIN3.854e-1127.14Multidrug resistance protein hmrM OS=Haemophilus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16690 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908562 ID=DR908562; Name=DR908562; organism=Citrus sinensis; type=EST; length=616bp
AAGCACTCGGGTATCAAATGAATTAGGAGCTGGCAATCCACAGGCAGCTC
AGTTGGCTGCCTGTGTCGTGATGGTTCTTGCAGTCACAGAGGCTGTCATA
GTGGGCACAATTCTCTTCTGCTGCCGCTATGTATTGGCATATGCATTCAA
CAGTGACAAGGACGTTGTGAATTATGTCAGTGAATTAGTTCCTCTGCTGA
GTTTCTCTATTATCATGGACAGTCTTCAATCAGTACTATCCGGAGTCGCT
AGAGGAACTGGGTGGCAGCACATAGGGGCTTATGTAAATCTTGGTGCGTA
TTATATTGTTGGAATTCCATTAGCATCTGTGTTATGTTTTGTTCTTAATC
TTAGAGGAAAAGGCCTTTGGATTGGAATAATGACCGGCTCAGCTGTACAA
GCAATTGTGCTTGCAATCATTACTGTTACCACAAATTGGCGAAAGCAGGC
GAGAATGGCAAGGGAGAGGATATTTGAGGGAACATATTCAGCTGGTAATA
GATCGGTTTGATTTGATGTAATAAAGTAATTAACTGCACAATTATGTTGC
CATCATAACAAGATTTCTTAGATGACAGCTACAAGCTGGATTCCACAATG
ACATTATTGCATTAAT
back to top