DR908540

Overview
NameDR908540
Unique NameDR908540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908540 vs. ExPASy Swiss-Prot
Match: CATA3_MAIZE (Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.157e-45
Identity = 83/137 (60.58%), Postives = 105/137 (76.64%), Query Frame = 2
Query:    2 GPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTRHAER-YPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 409
            GPNYLMLPVNAP+C H NNHYDG MNFMHRDEEVDY+PSR+ P R A    P+P   + GRREKA I K N+FKQPGERYRSW  DRQ+RF+ R+  +L  P+V+ E+RSIW+   ++ D SLG K+A+RLN++ ++
Sbjct:  360 GPNYLMLPVNAPRCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRQAAPPTPLPPRPVAGRREKATIRKPNDFKQPGERYRSWDADRQDRFVRRFADSLGHPKVSQELRSIWIDLLAKCDASLGMKIATRLNMKANM 496          
BLAST of DR908540 vs. ExPASy Swiss-Prot
Match: CATB_PSESY (Catalase OS=Pseudomonas syringae pv. syringae GN=katB PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 2
Query:   14 LMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTH-EVRSIWVSYWSQADRSLGQKLA 382
            L LPVN PK    N + DG +N  H    V+Y PSR +P    ++       ++G  ++A I +E NFKQ G+ +RS++   +   + R+ ++L D   TH E ++I +S   + DR  G ++A
Sbjct:  371 LSLPVNQPKVAVNNGNQDGALNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLFRSYSAKEKTDLVQRFGESLAD---THTESKNIMLSVLYKEDRHYGTRVA 491          
The following BLAST results are available for this feature:
BLAST of DR908540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CATA3_MAIZE3.157e-4560.58Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2[more]
CATB_PSESY8.677e-1133.06Catalase OS=Pseudomonas syringae pv. syringae GN=k... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16668 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908540 ID=DR908540; Name=DR908540; organism=Citrus sinensis; type=EST; length=620bp
TGGACCCAACTACTTGATGCTTCCAGTTAATGCACCCAAATGTCCTCATC
GCAACAATCATTATGATGGTTTCATGAATTTCATGCACAGGGATGAGGAG
GTCGATTACTTTCCTTCGAGGTATGATCCTACTCGTCATGCTGAGAGATA
TCCCATTCCTTCTGATGTAATTACAGGAAGGCGTGAGAAGGCTTGCATTG
AGAAGGAAAACAACTTCAAGCAGCCTGGAGAGAGATACCGATCCTGGGCC
CCAGACAGGCAAGAGAGGTTCCTTAATCGATGGATTAAGGCTTTATGTGA
CCCACGTGTCACCCATGAGGTTCGCAGCATATGGGTCTCTTACTGGTCTC
AGGCCGACAGATCTCTGGGTCAGAAGCTAGCTTCTCGTCTCAATGTGAGG
CCAAGCATTTGAAGGTGTCACTTGAACTGGAACACTGGATGCTTTTGACT
TGCCAAGAGTAAGCAAGGAGTGAACACCAAGGGTGCAGCTATGTGAAGAA
TTTCGATCCTATGTTTGCTGTTGTATATTGTAATATAGAAAATAAACTTG
CATGTTATGTGACTCTTTTCCTGTTGTTTCAATTAATAAAAGTCTGTTTT
ATGAAGTTCAAAAAAAAAAA
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