DR908509

Overview
NameDR908509
Unique NameDR908509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_DESVM (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:    9 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            YQ +VV N   LA  L   GY LVSGG+DNHL+L+DL    I G   E  LD A +T NKN+VP + +S  V  G+R+G+PA+TTRG  E E   +A +I
Sbjct:  281 YQQQVVKNAARLAGCLTAAGYDLVSGGTDNHLMLMDLTAKDITGKDAEHALDKAGMTANKNTVPFETRSPFVTSGVRLGTPALTTRGMKEAEMEKVAAWI 380          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_CAMHC (Serine hydroxymethyltransferase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            K Y  +V +NC+ L   L++ G+ LVSGG+DNHL+LV        G      L+ A IT+NKN+VPG+ +S  V  GIR+GS A+T+RG  EKEF  IA+ I
Sbjct:  279 KTYAKQVKANCKILGDTLMKRGFDLVSGGTDNHLILVSFLKKDYSGKDASNALENAGITVNKNTVPGETRSPFVTSGIRVGSAALTSRGMKEKEFEWIANKI 380          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA2_VIBVY (Serine hydroxymethyltransferase 2 OS=Vibrio vulnificus (strain YJ016) GN=glyA2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 46/111 (41.44%), Postives = 72/111 (64.86%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE 332
            K Y + V++N + LA  L   G  +V+GG+D HL+LVDLRP G+ G + E+ L+ A IT NKN +P D +  ++  G+R+G+PA T+RGF  +EF  I  +I + ++  +E
Sbjct:  294 KTYIDSVINNAKVLAEVLQTRGCDIVTGGTDTHLMLVDLRPKGLKGNKAEEALERAGITCNKNGIPFDTEKPMITSGVRLGTPAGTSRGFGAEEFKLIGHWIGDVLDGLVE 404          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEF5 (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 305
            K YQ +V+ N +A+A   ++ GY +VSGG+DNHL LV L   G+ G   +  L  A IT+NKN+VP D +S  V  G+RIG+PA+TTRGF   +   +A +I
Sbjct:  285 KAYQQQVIDNAQAMAGVFIKRGYDVVSGGTDNHLFLVSLIRQGLTGKDADAALGRAHITVNKNAVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCTELAGWI 386          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_STAHJ (Serine hydroxymethyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR-PMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 464
            KVYQ +V+ N + L+  L E G+++VSGG+DNHL+ VD++  + + G   E  LD   IT NKN++P D + A V  GIR+G+P  TTRGF E+ F  +      G  I+L  K     +KL+                  + R RV  LT ++P+
Sbjct:  279 KVYQEQVIKNAKVLSQTLQEEGFRIVSGGTDNHLLSVDVKNSVNVTGKEAEATLDSIGITCNKNTIPFDQEKAFVTSGIRLGTPTATTRGFDEEAFKEV------GRIISLALKNPNNDTKLK------------------EARERVSRLTAKYPL 410          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_MOOTA (Serine hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKL 344
            K YQ ++V+N R LA  L+  G+ LVSGG+DNHL+LVDLR   I G   E IL    IT+NKN++P D +   V  GIR+G+ A+T+RG      V +A  I   +    + KKL
Sbjct:  281 KRYQEQIVTNARTLADALMGYGFNLVSGGTDNHLMLVDLRNKNITGREAEDILASVQITVNKNAIPFDPQKPSVTSGIRLGTAALTSRGMDADAMVQVARAIDLALSYGPDEKKL 395          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_FRAP2 (Serine hydroxymethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 3
Query:    9 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 317
            YQ +V+ N +A+   L E    ++SGG++NHL+L+D+   G  G   E  L  A+IT+NKNS+P D +S  V  G+RIGSPA+TTRGF E E   IA+++ + V
Sbjct:  287 YQKQVLINAKAMEKVLKERNINIISGGTNNHLLLLDITNTGFSGKEAEAALGRANITVNKNSIPNDPRSPFVTSGLRIGSPAITTRGFKEAECEQIANWLADVV 390          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP-GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVAD----LRGRVEALTTQFPIPG 470
            K Y  ++  N  A+A++ +   Y +VSGG+ NHL+L+DLR   ++G   E +L  A IT+NKN VP  DKS  V  GIR+G+PAMTTRG                        K+ +  K+ +F++ V S   +  +NVAD    +R  V  L  QFP+ G
Sbjct:  300 KAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGM-----------------------KVAEAEKIVEFIDRVISA--ANDDNVADVCKQVRAEVRELCLQFPLNG 435          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 59/155 (38.06%), Postives = 83/155 (53.55%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 464
            K Y  ++++N + L  +L   G  +VSGG+DNHL+L+DLR + + G   EK LD   IT NKN++P D +   V  GIRIG+ A+T+RGF E E     D I E + +TL+                    N   +N+V   R RV ALT  FP+
Sbjct:  283 KTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEM----DEIGELIALTLK-----------------NIDNEEALNSV---RSRVAALTKTFPM 413          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYA_BACHD (Serine hydroxymethyltransferase OS=Bacillus halodurans GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 58/155 (37.42%), Postives = 80/155 (51.61%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 464
            K Y   ++ N + L  +L   G  LVSGG+DNHL+L+DLR +G+ G   EK LD   IT NKN++P D +S  V  GIRIG+ A+T+RG  E+    I      G  I L  K +    K+                   + R RV+ALT +FP+
Sbjct:  279 KSYGEAIIRNAKRLGEKLTSEGIDLVSGGTDNHLLLLDLRSLGLTGKVAEKALDDVGITTNKNTIPFDPESPFVTSGIRIGTAAVTSRGLDEEAMDEI------GATIALTLKNVDNEEKMN------------------EARERVDALTAKFPM 409          
The following BLAST results are available for this feature:
BLAST of DR908509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESVM1.492e-1849.00Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_CAMHC1.492e-1847.06Serine hydroxymethyltransferase OS=Campylobacter h... [more]
GLYA2_VIBVY1.492e-1841.44Serine hydroxymethyltransferase 2 OS=Vibrio vulnif... [more]
GLYA2_PSEF51.492e-1846.08Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA_STAHJ1.949e-1836.54Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_MOOTA1.949e-1844.35Serine hydroxymethyltransferase OS=Moorella thermo... [more]
GLYA_FRAP21.949e-1845.19Serine hydroxymethyltransferase OS=Francisella phi... [more]
GLYA_CHLP81.949e-1836.65Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_BACSK1.949e-1838.06Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA_BACHD1.949e-1837.42Serine hydroxymethyltransferase OS=Bacillus halodu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16637 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908509 ID=DR908509; Name=DR908509; organism=Citrus sinensis; type=EST; length=625bp
TTAAAGTTTACCAGAACAAGGTGGTCTCTAATTGCAGAGCGCTTGCAAGC
CGATTGGTTGAATTAGGTTACAAGCTGGTGTCAGGAGGGAGCGACAATCA
CCTGGTTCTTGTAGATCTAAGGCCGATGGGTATTGATGGGGCTCGGGTAG
AGAAAATTCTTGACATGGCCTCCATCACTCTCAACAAAAATTCAGTGCCT
GGTGACAAGAGTGCTCTAGTGCCGGGTGGTATTCGCATTGGCTCACCTGC
AATGACAACTAGAGGATTTTCTGAGAAAGAATTTGTTGCAATTGCTGACT
TTATACACGAGGGTGTAGAAATAACCCTGGAAGCTAAAAAGTTGGTTCAA
GGATCAAAGCTCCAAGACTTCATGAATTTTGTCACATCACCCAATTTCTC
GTTGATGAATAATGTCGCCGATCTTCGTGGTCGGGTTGAAGCTCTCACAA
CCCAGTTTCCCATCCCCGGAGTATGATTGTATAGTTGTTTTACAGGTTAA
AACCCGTTTGATGCTTTCTCATGGGGGAAAATGACAGGCACTATGTTTTT
GCTTGTGTGAACTGCAGGGGAAAATTAAATTATTATAATATAGGGGTTAA
ATTACTTATGGAAATGATGAATTAT
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