DR908470

Overview
NameDR908470
Unique NameDR908470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROYA (60S ribosomal protein L32 OS=Drosophila yakuba GN=RpL32 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROSI (60S ribosomal protein L32 OS=Drosophila simulans GN=RpL32 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROME (60S ribosomal protein L32 OS=Drosophila melanogaster GN=RpL32 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+ KRKEIVERA QL V +TN  ARLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROPS (60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROPE (60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROMI (60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROAZ (60S ribosomal protein L32 OS=Drosophila azteca GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROAI (60S ribosomal protein L32 OS=Drosophila affinis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_DROSU (60S ribosomal protein L32 OS=Drosophila subobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
The following BLAST results are available for this feature:
BLAST of DR908470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_DROYA1.888e-4070.1860S ribosomal protein L32 OS=Drosophila yakuba GN=... [more]
RL32_DROSI1.888e-4070.1860S ribosomal protein L32 OS=Drosophila simulans G... [more]
RL32_DROME1.888e-4070.1860S ribosomal protein L32 OS=Drosophila melanogast... [more]
RL32_DROAC3.220e-4070.1860S ribosomal protein L32 OS=Drosophila acanthopte... [more]
RL32_DROPS4.206e-4069.3060S ribosomal protein L32 OS=Drosophila pseudoobsc... [more]
RL32_DROPE4.206e-4069.3060S ribosomal protein L32 OS=Drosophila persimilis... [more]
RL32_DROMI4.206e-4069.3060S ribosomal protein L32 OS=Drosophila miranda GN... [more]
RL32_DROAZ4.206e-4069.3060S ribosomal protein L32 OS=Drosophila azteca GN=... [more]
RL32_DROAI4.206e-4069.3060S ribosomal protein L32 OS=Drosophila affinis GN... [more]
RL32_DROSU5.493e-4069.3060S ribosomal protein L32 OS=Drosophila subobscura... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16598 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908470 ID=DR908470; Name=DR908470; organism=Citrus sinensis; type=EST; length=634bp
GAAGCCGCGGCTCATCGTTTCAGAAAAATGGCTGTTCCTTTGCTGACCAA
GAAGATAGTGAAGAAGCGTCTCAAGAAGTTCAAGAGGCCCCAGAGTGACA
GGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGATTCA
CGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGGCTA
CGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATTCAAGAAGT
TTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGCACAACAGG
ACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAAGGA
GATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAACAAATTGG
CCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTGTGT
TAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATGGAT
GAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTTGTCACCTGA
ATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTATGTC
AACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTT
back to top