DR908470

Overview
NameDR908470
Unique NameDR908470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 408
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K F+V NV +LE L MH +TY AEIAHN+S K R  I+ RA  L + VTN   RL
Sbjct:   19 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 408
            R  SDR   V ENWR+ KGIDS VRR+F+G +  PNIGYGS+KKT+   P G+K ++V NV +L++L++H ++Y AEIA +VS++KR EIV +A +L V VTN   +L
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 408
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K  +V N+ +LE L MH ++Y AEIAHNVS+K R  ++ RA  L V VTN   RL
Sbjct:   20 RHHSDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 426
            R  SDR   VK +WRRP GIDS+VR++ KG   MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV RA +L + + N  ARL  + EE
Sbjct:   26 RHHSDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  124 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 393
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  124 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 393
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    R   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 393
            R +  R   + E WRRPKG  S++RRK K    MPN GYGS KK R   P+G+++ +V+N  +LE   +  +   A IA  V  +KR+EI+E+A +L +VV N
Sbjct:   30 RQEWHRYKKLGEKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  124 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 393
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   85 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELL----MMHNRTYCAEIAHNVSTKKR 345
            R QSDR   V  +WR+PKGID RVRR+F+G + MP IGYGS+KKTR   P+G   F +HN   L       M       AEIA  VS++KR
Sbjct:   20 RHQSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  124 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 393
            WR+PKG DS++R K KG    P+IG+ S K  R   P+G+++ +V+NV +LEL+   ++   A IA  V  KKR  I+ERA +L + V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of DR908470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_YEAST2.027e-2655.5660S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL5.896e-2652.7860S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA6.519e-2553.7060S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU3.955e-2249.1260S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_PYRFU9.435e-1648.8950S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO2.745e-1547.7850S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_METKA4.683e-1542.7250S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_PYRAB6.116e-1546.6750S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_TRIHA7.988e-1549.4560S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_THESM3.356e-1343.3350S ribosomal protein L32e OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16598 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908470 ID=DR908470; Name=DR908470; organism=Citrus sinensis; type=EST; length=634bp
GAAGCCGCGGCTCATCGTTTCAGAAAAATGGCTGTTCCTTTGCTGACCAA
GAAGATAGTGAAGAAGCGTCTCAAGAAGTTCAAGAGGCCCCAGAGTGACA
GGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGATTCA
CGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGGCTA
CGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATTCAAGAAGT
TTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGCACAACAGG
ACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAAGGA
GATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAACAAATTGG
CCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTGTGT
TAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATGGAT
GAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTTGTCACCTGA
ATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTATGTC
AACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTT
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