DR908470

Overview
NameDR908470
Unique NameDR908470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908470 vs. ExPASy Swiss-Prot
Match: RL32_SULIA (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:   85 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNK 396
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +    IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134
The following BLAST results are available for this feature:
BLAST of DR908470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_SULIA3.710e-1234.9150S ribosomal protein L32e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16598 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908470 ID=DR908470; Name=DR908470; organism=Citrus sinensis; type=EST; length=634bp
GAAGCCGCGGCTCATCGTTTCAGAAAAATGGCTGTTCCTTTGCTGACCAA
GAAGATAGTGAAGAAGCGTCTCAAGAAGTTCAAGAGGCCCCAGAGTGACA
GGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGATTCA
CGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGGCTA
CGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATTCAAGAAGT
TTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGCACAACAGG
ACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAAGGA
GATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAACAAATTGG
CCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTGTGT
TAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATGGAT
GAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTTGTCACCTGA
ATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTATGTC
AACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTT
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