DR908468

Overview
NameDR908468
Unique NameDR908468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 57/170 (33.53%), Postives = 89/170 (52.35%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V   +    AL +L+   +G
Sbjct:   39 LGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_YERPB (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fadB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 57/170 (33.53%), Postives = 89/170 (52.35%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V   +    AL +L+   +G
Sbjct:   39 LGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 57/170 (33.53%), Postives = 89/170 (52.35%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V   +    AL +L+   +G
Sbjct:   39 LGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 57/170 (33.53%), Postives = 89/170 (52.35%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V   +    AL +L+   +G
Sbjct:   39 LGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVVDPEKLVGSALTMLKQAIDG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_VIBPA (Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            +K  F  + + S    ++I S  P  F AGAD++     + + E        +  F  L  LP P +A I              CD R+C +     LGLPE  L ++PG+GGTQRLPRL+G   + D+I TG+++  K A  LG+V+ CVP
Sbjct:   39 MKEIFAQLKDSSGIKGMIIHSLKPDNFVAGADVRMLEACTTANEAQALAKQGQELFQQLSDLPYPVVAAIHGPCLGGGLELALACDYRVCTDFDKTRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVP 190          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: ECHM_RAT (Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.783e-18
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAG---QAQLKALELLRNKSE 511
            L  A ET  ED +   +++     K F AGAD+KE +  +  +   Y     S +  +  +  P IA ++             CD+   GE A  G PE  L  IPGAGGTQRL R VGKS+A +++ TG ++S +DA   GLV+   P     +  ++  E + N S+
Sbjct:   69 LNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSK 234          

HSP 2 Score: 20.7866 bits (42), Expect = 3.783e-18
Identity = 9/32 (28.12%), Postives = 15/32 (46.88%), Query Frame = 3
Query:  501 INQKGPIAIRMAKRAITKGLEVDMASALELEK 596
            I     I + MAK ++    E+ +    +LEK
Sbjct:  229 IANNSKIIVAMAKESVNAAFEMTLTEGNKLEK 260          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_VIBCH (Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae GN=fadJ PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 60/168 (35.71%), Postives = 82/168 (48.81%), Query Frame = 2
Query:   14 LKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRIC--GEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            ++  F T++E       ++I S  P  F AGAD++      S  E     +  +  F  L  LP P +A I              CD R+C   E   LGLPE  L ++PG+GGTQRLPRL+G   A D+I TG+++  K A  LG+V+ CVP       A  LL  K
Sbjct:   39 MQAVFATLNEKRGQIKGLIIHSLKPDNFIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDYRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGVVDACVPHSVLLDVAKRLLEEK 206          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_VIBC3 (Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 60/168 (35.71%), Postives = 82/168 (48.81%), Query Frame = 2
Query:   14 LKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRIC--GEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            ++  F T++E       ++I S  P  F AGAD++      S  E     +  +  F  L  LP P +A I              CD R+C   E   LGLPE  L ++PG+GGTQRLPRL+G   A D+I TG+++  K A  LG+V+ CVP       A  LL  K
Sbjct:   39 MQAVFATLNEKRGQIKGLIIHSLKPDNFIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDYRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGVVDACVPHSVLLDVAKRLLEEK 206          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_YERE8 (Fatty acid oxidation complex subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            L  A   + + S    +++RS+    F  GAD+ E   +    P ++H ++      F+ LE LP+PTIA I+              D R+    A +GLPET L I+PG GG+ RLPRL+G   A +II  G+ +  KDA+ +GLV+  V   +    AL +L    +G
Sbjct:   39 LGEALVVLEKQSELKGLLLRSA-KAAFIVGADITEFLSLFNEPPEKLHQWLVFANDIFNRLEDLPVPTIAAINGYALGGGCECILATDFRVASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDIIAKDALKVGLVDAVVAPEKLVDAALSILNQAIDG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: ECHM_BOVIN (Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.396e-18
Identity = 53/159 (33.33%), Postives = 79/159 (49.69%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALE 490
            L  A +   ED +   +++     KVF AGAD+KE + ++      Y     S +  L  +  P IA ++             CD+   GE A  G PE  +  IPGAGGTQRL R VGKS+A +++ TG ++S +DA   GLV+   P      +A++
Sbjct:   69 LNQALQAFEEDPAVGAIVLTGG-EKVFAAGADIKEMQSLTFQNC--YSGGFLSHWDQLTRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETVVEEAIQ 224          

HSP 2 Score: 22.7126 bits (47), Expect = 6.396e-18
Identity = 10/32 (31.25%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  501 INQKGPIAIRMAKRAITKGLEVDMASALELEK 596
            I     I   MAK ++    E+ +A  ++LEK
Sbjct:  229 IASNSKIVTAMAKESVNAAFEMTLAEGVKLEK 260          
The following BLAST results are available for this feature:
BLAST of DR908468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADB_YERPE2.519e-1833.53Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPB2.519e-1833.53Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPA2.519e-1833.53Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERP32.519e-1833.53Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_VIBPA3.290e-1834.87Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
ECHM_RAT3.783e-1833.14Enoyl-CoA hydratase, mitochondrial OS=Rattus norve... [more]
FADJ_VIBCH4.297e-1835.71Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBC34.297e-1835.71Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_YERE84.297e-1833.53Fatty acid oxidation complex subunit alpha OS=Yers... [more]
ECHM_BOVIN6.396e-1833.33Enoyl-CoA hydratase, mitochondrial OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16596 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908468 ID=DR908468; Name=DR908468; organism=Citrus sinensis; type=EST; length=620bp
CCGGTTGAGAGGCTTAAAGCATGCATTTGAAACTATCAGTGAGGATTCCT
CTGCTAATGTTGTCATGATACGTAGCTCGGTTCCTAAAGTGTTCTGTGCT
GGAGCTGATTTGAAGGAACGCAGGCAAATGAGTCCATCTGAGATTCATTT
TTATGTCAACACATTGCGATCTACATTCTCCTTCTTAGAGGCACTTCCTA
TTCCAACCATTGCTGTTATTGATGGAGCAGCATTGGGTGGTGGACTTGAA
ATGGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGG
CTTGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGC
GGCTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACT
GGCCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTA
CTGTGTTCCTGCTGGTCAAGCTCAGTTGAAGGCACTTGAATTGCTCAGGA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCGGCATTGGAACTGGAAAAGAGTG
CTACATTGGGACCTTGCATA
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