DR908468

Overview
NameDR908468
Unique NameDR908468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_CITK8 (Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.750e-17
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEL 493
            I E+ +   V+  S+ P  F AGAD+       S  E        +   + ++AL +P +A I              C  RIC + A  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  K A+ +GLV+  VP       A+EL
Sbjct:   46 IRENKALRGVVFISAKPDNFIAGADINMIGNCKSAQEAETLARQGQQIMAEIQALSVPVVAAIHGACLGGGLEMALACHRRICTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRPKQALRVGLVDEVVPHAILLEAAVEL 201          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_KLEP7 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.750e-17
Identity = 55/170 (32.35%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            L HA + + + S    +++RS     F  GAD+ E   +      ++  +++   S F+ LE LP+PTI+ ++              D R+      +GLPET L I+PG GG+ RLPRL+G   A +II  G+ V    A+ +GLV+  V A + +  AL +LR    G
Sbjct:   39 LGHALDVLEKQSDLKGLLLRSE-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTISAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVGADQALKIGLVDGVVAAEKLRDGALAILRQAMNG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: ECHM_DICDI (Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.750e-17
Identity = 53/160 (33.12%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEL 493
            +  A +   ED     ++I  S  K F AGAD+KE  +++  +   Y N L + +  L  +  P IA ++             CD+ I GE A+ G PE  L  IPG GGTQRL R +GKS A +++ TG  ++  +A   GLV+  VP  +   +A ++
Sbjct:   56 INSAVKLFQEDKDVGSIIITGS-EKAFAAGADIKEMEKVTLPDA--YNNDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAVFGQPEIKLGTIPGCGGTQRLIRAIGKSKAMELVLTGNNLTAVEAEKAGLVSKVVPVEELLTEATKM 212          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_PSYA2 (Fatty acid oxidation complex subunit alpha OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 54/153 (35.29%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   65 MIRSSVPKVFCAGADLKE---RRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            +I +S   VF AGAD+ E     + S  EI  +V  +   F+  E LP P +A I+             C+ R+  + A++GLPET L I PG GGT R  R++G   A ++I TG      DA+ LGLV+  V A   Q  A++L++    G
Sbjct:   56 LIVTSSKGVFIAGADITEFVASFKQSEEEIKDWVININDAFNRFEDLPFPKVAAINGAALGGGCEMTLVCEYRVMSDKAIIGLPETQLGIFPGFGGTVRSTRVIGIDNALELIATGAPKKALDALKLGLVDATVAADDLQDAAIDLVKKCISG 208          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadJ PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   41 EDSSANV--VMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            E+  A++  ++I+S  P  F AGAD+       + SE        +  F  +E LP  T+A I              CD R+C +     LGLPE  L ++PG+GGTQRLPRL+G   + DII TG+++  K A+ LG+V+  VP
Sbjct:   47 EEQQAHIKGLVIQSGKPDNFIAGADINMIANCQNASEAQALAEKGQHLFQRIEDLPFATVAAIHGPCLGGGLELALACDYRVCSDDNKTKLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDIILTGKQLRPKTALKLGVVDASVP 191          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHISS (Fatty acid oxidation complex subunit alpha OS=Shigella sonnei (strain Ss046) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEGS 517
            + E+     V+  S+ P  F AGAD+        + E        +   + + ALPIP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+EL +     S
Sbjct:   46 LRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKKDRPSS 209          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHIFL (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEGS 517
            + E+     V+  S+ P  F AGAD+        + E        +   + + ALPIP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+EL +     S
Sbjct:   46 LRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKKDRPSS 209          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEGS 517
            + E+     V+  S+ P  F AGAD+        + E        +   + + ALPIP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+EL +     S
Sbjct:   46 LRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEINALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKKDRPSS 209          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHEB8 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 53/145 (36.55%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            I  DSS   +++ S     F AGAD+        + +           F+ LEAL IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+K+  K A+ +GLVN  VP
Sbjct:   44 IKSDSSIRGLVLISGKKDSFVAGADISMLDACKTAGDAKALSQQGHVVFNELEALTIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKKIRPKQALKMGLVNDVVP 188          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL6 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6 GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 55/164 (33.54%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEGS 517
            + E+     V+  S+ P  F AGAD+        + E        +   + + ALP+P IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A+ LGLV+  VP       A+EL +     S
Sbjct:   46 LRENKDLRGVVFISAKPDNFIAGADINMIANCKTAQEAEALARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKQDRPSS 209          
The following BLAST results are available for this feature:
BLAST of DR908468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADJ_CITK84.750e-1736.54Fatty acid oxidation complex subunit alpha OS=Citr... [more]
FADB_KLEP74.750e-1732.35Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
ECHM_DICDI4.750e-1733.13Probable enoyl-CoA hydratase, mitochondrial OS=Dic... [more]
FADB_PSYA26.204e-1735.29Fatty acid oxidation complex subunit alpha OS=Psyc... [more]
FADJ_VIBF18.103e-1736.55Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_SHISS8.103e-1734.15Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIFL8.103e-1734.15Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIF88.103e-1734.15Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHEB88.103e-1736.55Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ECOL68.103e-1733.54Fatty acid oxidation complex subunit alpha OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16596 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908468 ID=DR908468; Name=DR908468; organism=Citrus sinensis; type=EST; length=620bp
CCGGTTGAGAGGCTTAAAGCATGCATTTGAAACTATCAGTGAGGATTCCT
CTGCTAATGTTGTCATGATACGTAGCTCGGTTCCTAAAGTGTTCTGTGCT
GGAGCTGATTTGAAGGAACGCAGGCAAATGAGTCCATCTGAGATTCATTT
TTATGTCAACACATTGCGATCTACATTCTCCTTCTTAGAGGCACTTCCTA
TTCCAACCATTGCTGTTATTGATGGAGCAGCATTGGGTGGTGGACTTGAA
ATGGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGG
CTTGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGC
GGCTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACT
GGCCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTA
CTGTGTTCCTGCTGGTCAAGCTCAGTTGAAGGCACTTGAATTGCTCAGGA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCGGCATTGGAACTGGAAAAGAGTG
CTACATTGGGACCTTGCATA
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