DR908468

Overview
NameDR908468
Unique NameDR908468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 2
Query:   65 MIRSSVPKVFCAGADLKERR---QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            ++ SS    F  GAD+ E      +   E+  +++   + F+ LE +P+PT++ I               D R+  E A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA++LG+V+  V        ++ +L+   EG
Sbjct:   55 LLLSSDKSAFIVGADITEFLGLFDIPTEELSDWLHQANAIFNRLEDIPVPTLSAITGFALGGGCECVLATDFRLADETASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDALALGMVDGVVSRETLITDSVTMLKKAIEG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_KLEP3 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae (strain 342) GN=fadB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 54/170 (31.76%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            L HA + + + +    +++RS     F  GAD+ E   +      ++  +++   S F+ LE LP+PTI+ ++              D R+      +GLPET L I+PG GG+ RLPRL+G   A +II  G+ V    A+ +GLV+  V A + +  AL +LR    G
Sbjct:   39 LGHALDVLEKQNDLKGLLLRSE-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTISAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVGADQALKIGLVDGVVAAEKLRDGALAILRQAING 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_SHEB8 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRN 502
            L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE LP PT + I               D RI    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA+ +G V+  V     +  A+++L++
Sbjct:   36 LASLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDSVVAPQALEAAAIQMLKD 203          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRN 502
            L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE LP PT + I               D RI    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA+ +G V+  V     +  A+++L++
Sbjct:   36 LTSLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKD 203          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_SHEB2 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS223) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRN 502
            L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE LP PT + I               D RI    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA+ +G V+  V     +  A+++L++
Sbjct:   36 LASLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILTTDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKD 203          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHESR (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            I  DSS   +++ S     F AGAD+       +  +           F+ LEAL IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLVN  VP
Sbjct:   44 IKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVP 188          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHESM (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            I  DSS   +++ S     F AGAD+       +  +           F+ LEAL IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLVN  VP
Sbjct:   44 IKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVP 188          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHESA (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            I  DSS   +++ S     F AGAD+       +  +           F+ LEAL IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLVN  VP
Sbjct:   44 IKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVP 188          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            I  DSS   +++ S     F AGAD+       +  +           F+ LEAL IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLVN  VP
Sbjct:   46 IKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVP 190          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 56/171 (32.75%), Postives = 84/171 (49.12%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS----TFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEL-LRNKSEGSDRH 526
            I  D+S   +++ S     F AGAD+     +   E       L       F+ LE+LPIP +A I+             C  R+C      ++G+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLV+  VP       A+E+ L  K     +H
Sbjct:   46 IKADTSIKGLVLVSGKKDSFVAGADIS---MLDACETATDAKQLSQQGHVVFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGLLPGGGGTQRLPRLVGVTTALDMMLTGKQLRPKQALKMGLVDDAVPESILLRTAVEMALAGKRPAKKKH 213          
The following BLAST results are available for this feature:
BLAST of DR908468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADB_VIBF11.382e-1632.68Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_KLEP31.382e-1631.76Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADB_SHEB81.805e-1632.54Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB51.805e-1632.54Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB21.805e-1632.54Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHESR2.358e-1635.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHESM2.358e-1635.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHESA2.358e-1635.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHEON2.358e-1635.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHEHH2.358e-1632.75Fatty acid oxidation complex subunit alpha OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16596 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908468 ID=DR908468; Name=DR908468; organism=Citrus sinensis; type=EST; length=620bp
CCGGTTGAGAGGCTTAAAGCATGCATTTGAAACTATCAGTGAGGATTCCT
CTGCTAATGTTGTCATGATACGTAGCTCGGTTCCTAAAGTGTTCTGTGCT
GGAGCTGATTTGAAGGAACGCAGGCAAATGAGTCCATCTGAGATTCATTT
TTATGTCAACACATTGCGATCTACATTCTCCTTCTTAGAGGCACTTCCTA
TTCCAACCATTGCTGTTATTGATGGAGCAGCATTGGGTGGTGGACTTGAA
ATGGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGG
CTTGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGC
GGCTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACT
GGCCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTA
CTGTGTTCCTGCTGGTCAAGCTCAGTTGAAGGCACTTGAATTGCTCAGGA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCGGCATTGGAACTGGAAAAGAGTG
CTACATTGGGACCTTGCATA
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