DR908468

Overview
NameDR908468
Unique NameDR908468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            I  DSS   +++ S     F AGAD+        + +           F+ LEAL IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A+ +GLVN  VP
Sbjct:   44 IKSDSSIRGLVLISGKKDSFVAGADISMLDACKTAGDAKALSQQGHVVFNELEALTIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVP 188
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALTY (Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALTI (Fatty acid oxidation complex subunit alpha OS=Salmonella typhi GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALPB (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALNS (Fatty acid oxidation complex subunit alpha OS=Salmonella newport (strain SL254) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALHS (Fatty acid oxidation complex subunit alpha OS=Salmonella heidelberg (strain SL476) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALG2 (Fatty acid oxidation complex subunit alpha OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALEP (Fatty acid oxidation complex subunit alpha OS=Salmonella enteritidis PT4 (strain P125109) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALDC (Fatty acid oxidation complex subunit alpha OS=Salmonella dublin (strain CT_02021853) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
[Close]
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALCH (Fatty acid oxidation complex subunit alpha OS=Salmonella choleraesuis GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2 
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205
The following BLAST results are available for this feature:
BLAST of DR908468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADJ_SHEB52.358e-1635.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SALTY2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALTI2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPB2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALNS2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALHS2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALG22.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALEP2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALDC2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALCH2.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16596 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908468 ID=DR908468; Name=DR908468; organism=Citrus sinensis; type=EST; length=620bp
CCGGTTGAGAGGCTTAAAGCATGCATTTGAAACTATCAGTGAGGATTCCT
CTGCTAATGTTGTCATGATACGTAGCTCGGTTCCTAAAGTGTTCTGTGCT
GGAGCTGATTTGAAGGAACGCAGGCAAATGAGTCCATCTGAGATTCATTT
TTATGTCAACACATTGCGATCTACATTCTCCTTCTTAGAGGCACTTCCTA
TTCCAACCATTGCTGTTATTGATGGAGCAGCATTGGGTGGTGGACTTGAA
ATGGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGG
CTTGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGC
GGCTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACT
GGCCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTA
CTGTGTTCCTGCTGGTCAAGCTCAGTTGAAGGCACTTGAATTGCTCAGGA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCGGCATTGGAACTGGAAAAGAGTG
CTACATTGGGACCTTGCATA
back to top