DR908468

Overview
NameDR908468
Unique NameDR908468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALA4 (Fatty acid oxidation complex subunit alpha OS=Salmonella agona (strain SL483) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKE 205          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_PHOLL (Fatty acid oxidation complex subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   20 HAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            + F+   + S    +++ S  P  F AGAD+         E         +  FS +   P+P +A I              C  R+C +     LGLPE  L ++PG+GGTQRLPRL+G S A DI+ TG+++  K A+ LGLV+  VP
Sbjct:   56 NVFKQAQQSSGLKGLILISGKPDTFIAGADISMIAGCKTKEDARDLAEKGQKLFSQIANYPLPVVAAIHGACLGGGLELALACHWRVCSQDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSSALDIMLTGKQLRAKQALRLGLVDDAVP 205          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_SHEB9 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS195) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 54/169 (31.95%), Postives = 85/169 (50.30%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRN 502
            L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE LP PT + I               D R+    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA+ +G V+  V     +  A+++L++
Sbjct:   36 LASLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRVADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKD 203          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_ALISL (Fatty acid oxidation complex subunit alpha OS=Aliivibrio salmonicida (strain LFI1238) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 53/173 (30.64%), Postives = 87/173 (50.29%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS---EIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNKSEG 514
            LR L  A + + +      +++ SS    F  GAD+ E   +  +   E+  +++     FS LE LP+PT++ I               D R+  + A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA+ +G+V+  V        ++ +L+   +G
Sbjct:   36 LRSLGEAIDVLYKQKDLQALLL-SSGKSAFIVGADITEFLGLFDTPEEELSDWLHQANVIFSRLEDLPVPTLSAITGFALGGGCECVLATDFRLADDTASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDALKIGMVDGIVSRETLIDASVSMLKQAIDG 207          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = 2
Query:   29 ETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEL 493
            + I  DSS   +++ S     F AGAD+        +E            F+ LE L IP +A I              C  R+C +++  +LG+PE  L ++PG GGTQRLPRL+G + A D++ TG++V  K A+ +GLV+  VP       A+E+
Sbjct:   42 QEIKADSSIKGLVLISGKADSFVAGADISMLDACETAEDARLLSRQGHHVFAELEGLNIPVVAAIHGACLGGGLELALACHQRVCSDSSKTMLGVPEVQLGLLPGGGGTQRLPRLIGIAKALDLMLTGKQVRPKQAVKMGLVDDVVPESILLDTAIEM 199          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_SALSV (Fatty acid oxidation complex subunit alpha OS=Salmonella schwarzengrund (strain CVM19633) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRNK 505
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++ALP+P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+  GLV+  VP       A+EL + +
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALRAGLVDDVVPQTILLEAAVELAKKE 205          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 54/167 (32.34%), Postives = 84/167 (50.30%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELL 496
            L  L  A + ++  S    VM+ S   + F  GAD+ E   +      E+  ++    S F+ LE LP+PT+AV+               DLRI  +   +GLPET L I+PG GG  RLPR++G   A +II  G+    ++A+ +GL++  V + +    AL+ L
Sbjct:   36 LASLDKALDALTAHSGLKGVMLTSD-KEAFIVGADITEFLGLFAKPEEELDQWLQFANSIFNKLEDLPVPTVAVVKGHTLGGGCECVLATDLRIGDKTTSIGLPETKLGIMPGFGGCVRLPRVIGADSAMEIITQGKACRAEEALKIGLLDAVVDSDRLYASALQTL 201          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_VIBVU (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus GN=fadB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 54/167 (32.34%), Postives = 84/167 (50.30%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELL 496
            L  L  A + ++  S    VM+ S   + F  GAD+ E   +      E+  ++    S F+ LE LP+PT+AV+               DLRI  +   +GLPET L I+PG GG  RLPR++G   A +II  G+    ++A+ +GL++  V + +    AL+ L
Sbjct:   36 LASLDKALDALTAHSGLKGVMLTSD-KEAFIVGADITEFLGLFAKPEEELDQWLQFANSIFNKLEDLPVPTVAVVKGHTLGGGCECVLATDLRIGDKTTSIGLPETKLGIMPGFGGCVRLPRVIGADSAMEIITQGKACRAEEALKIGLLDAVVDSDRLYASALQTL 201          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_SHEPW (Fatty acid oxidation complex subunit alpha OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRST---FSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLRN 502
            L  A ++I +++S   +M+ S+ P  F  GAD+ E   +   E    ++ L      F+ LE LP PTI+ I+              D R+    A +GLPET L IIPG GGT RLPR+VG   A + I +G+    + A+++G ++  V   Q Q  AL++L++
Sbjct:   39 LNAALDSIKQNNSIKGLMLTSAKP-AFIVGADITEFLGLFAEEDAVLLSWLEEANVVFNKLEDLPFPTISAINGFALGAGCETILATDFRVADTTARIGLPETKLGIIPGFGGTVRLPRVVGTDNALEWITSGKDQRPEAALNVGAIDALVAPEQLQSAALKMLKD 203          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADB_PSYWF (Fatty acid oxidation complex subunit alpha OS=Psychrobacter sp. (strain PRwf-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 50/148 (33.78%), Postives = 77/148 (52.03%), Query Frame = 2
Query:   65 MIRSSVPKVFCAGADLKE---RRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLR 499
            +I +S   VF AGAD+ E         +EI  ++  +   F+  E LP P +A I+             C+ R+ G+ A +GLPET L I PG GG+ R PR++G   A ++I TG+     +A+ LGLV+  V     Q  A++L++
Sbjct:   56 LIVTSSKGVFIAGADITEFVSHFNKEAAEIEKWIVDINGVFNRFEDLPFPKVAAINGAALGGGCEMTLVCEYRVMGDKAQIGLPETQLGIFPGFGGSVRTPRVIGIDNAVELIATGKAQKPAEALKLGLVDAVVAQDDLQEAAVDLVK 203          
The following BLAST results are available for this feature:
BLAST of DR908468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADJ_SALA42.358e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_PHOLL2.358e-1634.00Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADB_SHEB92.358e-1631.95Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_ALISL2.358e-1630.64Fatty acid oxidation complex subunit alpha OS=Alii... [more]
FADJ_SHEAM3.079e-1633.54Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SALSV3.079e-1634.38Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_VIBVY3.079e-1632.34Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_VIBVU3.079e-1632.34Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_SHEPW3.079e-1633.73Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PSYWF3.079e-1633.78Fatty acid oxidation complex subunit alpha OS=Psyc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16596 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908468 ID=DR908468; Name=DR908468; organism=Citrus sinensis; type=EST; length=620bp
CCGGTTGAGAGGCTTAAAGCATGCATTTGAAACTATCAGTGAGGATTCCT
CTGCTAATGTTGTCATGATACGTAGCTCGGTTCCTAAAGTGTTCTGTGCT
GGAGCTGATTTGAAGGAACGCAGGCAAATGAGTCCATCTGAGATTCATTT
TTATGTCAACACATTGCGATCTACATTCTCCTTCTTAGAGGCACTTCCTA
TTCCAACCATTGCTGTTATTGATGGAGCAGCATTGGGTGGTGGACTTGAA
ATGGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGG
CTTGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGC
GGCTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACT
GGCCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTA
CTGTGTTCCTGCTGGTCAAGCTCAGTTGAAGGCACTTGAATTGCTCAGGA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCGGCATTGGAACTGGAAAAGAGTG
CTACATTGGGACCTTGCATA
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