DR908467

Overview
NameDR908467
Unique NameDR908467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: INDY1_DROME (Protein I'm not dead yet OS=Drosophila melanogaster GN=Indy PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 52/192 (27.08%), Postives = 99/192 (51.56%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMATLLFIIPS-------MKQKG--------EKLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSN 526
            E  V+ +F  ++ ++ TR       GW  L N +   +   ++ +  + F++P+         ++G          L+ W   + K+PW ++ LLG GFA+A+G + SG+A  +  AL  L+  P   +  +V L++  +T F+SN A   +++P+L +++  + +HPL L++P  +    +F LP  TP N
Sbjct:  336 EIQVMILFIFMVVMYFTRK-PGIFLGWADLLNSKDIRNSMPTIFVVVMCFMLPANYAFLRYCTRRGGPVPTGPTPSLITWKFIQTKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVVILVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFHLPVSTPPN 526          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: Y608_HAEIN (Uncharacterized transporter HI0608 OS=Haemophilus influenzae GN=HI0608 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 34/115 (29.57%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  215 WNIILLLGAGFAIADGVRTSGLADDLSKALDFL-EAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIE 556
            W +++L G G  ++  ++ SG +  L+ ++ F+ +   +  I  +V      +TEFTSN A+  L++P+ I IA+++ +  + L +   IGA  +F+LP  TP N + F +G ++
Sbjct:  318 WGVLMLFGGGLTLSAVLKDSGASKILADSIVFMIDGQHFYLIGLLVAAFIIFLTEFTSNTASAALLVPIFISIAQSLGMPEIGLALIIGIGASCAFMLPVATPPNAIVFGSGQVK 432          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: Y672_METJA (Uncharacterized transporter MJ0672 OS=Methanocaldococcus jannaschii GN=MJ0672 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 47/180 (26.11%), Postives = 84/180 (46.67%), Query Frame = 2
Query:   11 VLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLS-KALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTG 547
            +L +F ++ +LW+      +I      FN +  D   ++    LLF+          L++ N  KK+ W  ++L G    +   +  SG    LS K +  L     + +  +V  I+ I+T F SN   T +++P+L  ++  +    L+L V   + A  SF+LP GTP N + ++ G
Sbjct:  240 LLVIFVLIASLWIISDYLSEI------FNVQYFDSVIAIFAIILLFVF--------NLVEVNDFKKIDWGTLILFGGALCLGGVIVKSGANTFLSEKLIAILGNLTPIVLLFLVVTITIILTNFISNTGLTGIIVPILFGVSLGIPKEILILAV--GMSASCSFILPVGTPPNAIVYSEG 403          
The following BLAST results are available for this feature:
BLAST of DR908467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
INDY1_DROME1.555e-1827.08Protein I'm not dead yet OS=Drosophila melanogaste... [more]
Y608_HAEIN3.141e-1129.57Uncharacterized transporter HI0608 OS=Haemophilus ... [more]
Y672_METJA5.358e-1126.11Uncharacterized transporter MJ0672 OS=Methanocaldo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16595 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-15_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908467 ID=DR908467; Name=DR908467; organism=Citrus sinensis; type=EST; length=634bp
TGAAAAGATGGTACTAGCTGTATTTGGGATGCTAATAGCATTGTGGATGA
CAAGATCAATAACAGATGACATTCCAGGTTGGGGAGCACTCTTCAATGAC
CGTGCTGGTGATGGAACTGCTAGTGTTGTGATGGCAACATTGTTGTTCAT
AATTCCGAGCATGAAGCAAAAGGGAGAAAAATTGATGGATTGGAACAAAT
GCAAGAAGCTACCTTGGAACATTATATTGCTTTTAGGGGCTGGCTTTGCT
ATAGCTGATGGAGTCAGGACTAGCGGTCTTGCTGATGATCTGTCAAAAGC
ATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATTGCACCTATCGTAT
GTCTGATTAGCGCGATTATTACTGAATTCACATCAAATAATGCCACAACA
ACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAACTATGCATGTTCA
TCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTTTCTTTCT
TGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAACCGGGCAC
ATCGAATTCAAGATATGATCAAGACAGGGCTGCCCTTAAGATGCTGGCAT
TGCTGCTCTGGCCTTTCTAATGCCTACACTTGGT
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