DR908465

Overview
NameDR908465
Unique NameDR908465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 57/184 (30.98%), Postives = 80/184 (43.48%), Query Frame = 1
Query:   67 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETE-MDAFGLEKYPSVEL 615
            YRGVRQR WGKWVAEIR PK R RLWLG+F T             KL G  A LN PHL+ +          +K + +     +   C  L +N                A+    ++      +K     + S S        S + S+  +++ SFLD   +K ET+ M   G +K P ++L
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPHLQRNTRPSLSNSQRFKWVPSRKFISMFPSCGMLNVN----------------AQPSVHIIQQRLEELKKTGLLSQSYS--------SSSSSTESKTNTSFLDEKTSKGETDNMFEGGDQKKPEIDL 187          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   13 AVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFG 279
            + P   V+     K  K Y+G+R R WGKWVAEIR P  R+R+WLG++ T              LRG  ARLNFP L   G  VTG  G
Sbjct:   12 STPAVTVAAVATRKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELL-AGVTVTGGGG 99          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 1
Query:    7 PKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHH 252
            PK    K   + +V      +RGVR R WGKWV+EIR PK ++R+WLGTF T              ++G  A LNFP L +H
Sbjct:   25 PKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYH 106          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 39/86 (45.35%), Postives = 45/86 (52.33%), Query Frame = 1
Query:    1 LSPKAVPMKHVSNAQVAK-------PTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFP 237
            +S K  PMK     +V          T+ +RGVRQR WGKW AEIR P  R R+WLGTFDT             +LRG  A LNFP
Sbjct:   58 VSDKEKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   58 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAH---VTGEFGDYKPLHASVDAKLQAICQN 336
            +K +RGVRQR WG WV+EIR P  + R+WLGTFDT              + G+ A+ NFP +K +G++   +       K L   ++AKL+  C++
Sbjct:    4 SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKD 99          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 LSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFP 237
            ++  AV  +  S+  + +P K YRGVRQR WGKW AEIR P   TR+WLGTF+T             + RG  A+LNFP
Sbjct:   40 ITGSAVTKECESSMSLERPKK-YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 56/181 (30.94%), Postives = 75/181 (41.44%), Query Frame = 1
Query:   67 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKV-ENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWET--EMDAFGLEKY 600
            +RGVR R WGKWV+EIR P+ ++R+WLGTF T              ++G  A LNFP L +H            P  AS D K                            + +     A A + K  E+ S+T  SSP  D + SD        DV+  + ND  W++    D F LE Y
Sbjct:   40 FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYH-----------LPRPASADPK----------------------------DIQEAAAAAAAVDWKAPESPSSTVTSSPVADDAFSDLPDLL--LDVNDHNKNDGFWDSFPYEDPFFLENY 179          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   52 KPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKH 249
            K   +YRG+R+R WGKW AEIR P+   R+WLGTF+T             ++RG+ A+LNFP L H
Sbjct:   74 KRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHH 139          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   19 PMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHL 243
            P + V N    +  K YRG+R+R WGKWVAEIR P  R+RLWLG++ T              LRG  ARLNFP L
Sbjct:   17 PQEEVPNHVATR--KPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDL 89          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   67 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVT 267
            YRGVRQR WGKW AEIR PK   R+WLGTF+T             K +G  A+LNFP     G++ T
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNST 156          
The following BLAST results are available for this feature:
BLAST of DR908465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
DRE2F_ARATH5.724e-1330.98Dehydration-responsive element-binding protein 2F ... [more]
RA210_ARATH3.710e-1243.82Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF38_ARATH4.846e-1241.46Ethylene-responsive transcription factor ERF038 OS... [more]
CRF1_ARATH4.846e-1245.35Ethylene-responsive transcription factor CRF1 OS=A... [more]
SHN3_ARATH6.329e-1237.50Ethylene-responsive transcription factor SHINE 3 O... [more]
RAP26_ARATH8.266e-1245.57Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF39_ARATH8.266e-1230.94Ethylene-responsive transcription factor ERF039 OS... [more]
RAP23_ARATH1.080e-1146.97Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP21_ARATH1.080e-1148.00Ethylene-responsive transcription factor RAP2-1 OS... [more]
EF114_ARATH1.841e-1149.25Ethylene-responsive transcription factor ERF114 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16593 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908465 ID=DR908465; Name=DR908465; organism=Citrus sinensis; type=EST; length=634bp
CTCAGCCCAAAAGCAGTCCCAATGAAGCATGTCAGCAACGCTCAAGTTGC
CAAGCCAACAAAGCTTTACAGGGGTGTGAGACAGAGGCACTGGGGCAAAT
GGGTTGCTGAAATAAGACTCCCCAAGAACAGAACCAGGCTTTGGCTTGGC
ACTTTTGATACAGCTGAAGAAGCTGCTTTGGCCTATGACCAAGCTGCTTA
TAAGCTAAGAGGAGAGTTTGCAAGACTCAATTTCCCGCACCTCAAGCATC
ATGGAGCCCATGTCACTGGTGAATTTGGTGATTACAAGCCTCTTCATGCT
TCCGTTGATGCAAAATTGCAAGCCATCTGCCAAAACTTGGCTCTTAACAA
CAACGTGCAGAAACAAACATCCAAGCAGCAGCAGCAGCAGCAGGAGGCTG
AAACAAAACCAGTGTTGTTACCAGCTACTGCTGCTAACATAAAGGTTGAG
AACACATCAGCAACTTCATTATCATCACCAACACCAGATCATTCATTATC
TGATGCTGGCTCATCATCGCCAGAATCTGACGTATCTTTCTTAGACTTCA
ATGACACCAAGTGGGAAACTGAAATGGATGCTTTTGGCTTGGAGAAATAC
CCTTCTGTGGAATTGATTGGGAAGCTATTAGAAA
back to top