DR908460
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GG+ DP D ++ D K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG----GPLGE---VVDPLYPGGTFDPL----------GLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP +D ++ + K+K +KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 115 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN Sbjct: 110 VFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14 Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R +G + Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ LVTG GP +NL DHLADPVNNN Sbjct: 114 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----EPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14 Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN Sbjct: 116 VFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14 Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+ + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 114 VFPELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14 Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 3 Query: 126 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 ++ ++ LMG E R A G +G L Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 18 IWATQVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------ASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 112
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14 Identity = 57/161 (35.40%), Postives = 75/161 (46.58%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L I A WF+ G I G NY +P + +++ LMG E R N G G G + Y G + DP D + + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P NN Sbjct: 120 VTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGPAGE----GLDPLYPGEAFDPL----------GLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14 Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L + G+ E WF+ G I G +Y P ++ ++ LMG E R G +G + Y GG+ DP D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 126 VFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGE---VTDPIYPGGNFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14 Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 3 Query: 6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458 + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP D ++ + K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253 The following BLAST results are available for this feature:
BLAST of DR908460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908460 ID=DR908460; Name=DR908460; organism=Citrus sinensis; type=EST; length=636bpback to top |