DR908460

Overview
NameDR908460
Unique NameDR908460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R         +G    +    Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  115 VFPELLARNGVKFGEAV--WFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----EPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 62/165 (37.58%), Postives = 79/165 (47.88%), Query Frame = 3
Query:    6 IAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 470
            + PE+L + AG+  Q     WF+ G  I   G  NY  +   +          +++ LMG AE  R    AN GS G    L    Y GG  DP               D  +  + K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP  N    S
Sbjct:   98 LTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEGFLDDLD-TLYPGGPFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  234 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   40 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  234 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  234 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G    +    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct:  111 VFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VTDPIYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G         Y GGS DP               D ++  + ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  114 VFPELFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVID---PLYPGGSFDPL----------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  234 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            YLGGS DP               D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct:  188 YLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  234 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  234 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of DR908460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB23_NICPL5.177e-1435.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2_DUNTE6.762e-1437.58Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2D_SOLLC6.762e-1450.67Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC6.762e-1450.67Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC6.762e-1450.67Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOYBN6.762e-1435.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_PETSP6.762e-1434.38Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB48_MAIZE8.831e-1450.67Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC1.153e-1349.33Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.153e-1349.33Chlorophyll a-b binding protein 3A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16588 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-46_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908460 ID=DR908460; Name=DR908460; organism=Citrus sinensis; type=EST; length=636bp
GAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAA
ACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATA
CAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCA
TGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCA
ATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGG
CGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGA
AAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGA
AGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTAC
AGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTCA
ACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTG
TTCATTGCTTGGAATTATATATTCCAAGCCTTGTCATCCCCCACTCTGTT
CTATTCTACTTTCCCCATTGTAAAATTATCTATGTGAAAAGTGAATGTAA
CTTGGCGGAAATGACATGTTAATTGCTAAAAAAAAA
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