DR908460

Overview
NameDR908460
Unique NameDR908460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 3
Query:  243 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 458
            G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct:  185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 51/153 (33.33%), Postives = 71/153 (46.41%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 461
            + PE LG    +  +   A    G     G    W +  T+  +E   + FAE +R  +  +P           +KY GG+ DP              KD    ++ KLKE+KNGRLAMLA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct:  102 LVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDPL----------GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of DR908460 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 51/159 (32.08%), Postives = 71/159 (44.65%), Query Frame = 3
Query:    6 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 461
            I PE LG    +  +   A        P G   Y   P       T+  +E   + F EH+R  +  +            +KY GG+ DP              KD    ++ K+KE+KNGRLA+LAI+G+ V Q    G GP +NL  HLADP +NN+
Sbjct:  103 IVPEALGLGNWVKAQEWAAI-------PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
The following BLAST results are available for this feature:
BLAST of DR908460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB23_HORVU6.329e-1245.83Chlorophyll a-b binding protein of LHCII type III,... [more]
CB121_HORVU6.329e-1233.33Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC8.266e-1232.08Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16588 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-46_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908460 ID=DR908460; Name=DR908460; organism=Citrus sinensis; type=EST; length=636bp
GAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAA
ACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATA
CAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCA
TGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCA
ATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGG
CGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGA
AAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGA
AGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTAC
AGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTCA
ACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTG
TTCATTGCTTGGAATTATATATTCCAAGCCTTGTCATCCCCCACTCTGTT
CTATTCTACTTTCCCCATTGTAAAATTATCTATGTGAAAAGTGAATGTAA
CTTGGCGGAAATGACATGTTAATTGCTAAAAAAAAA
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