DR908452

Overview
NameDR908452
Unique NameDR908452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF1_DROME (V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.282e-28
Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  228 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            LI++I DEDT  GFLL GVG ++  R  N+++VD  T V  +ED FK F  ++DI I+LI+Q  A +IR ++D++  P+PA+LEIPSKDHPYD + DS+L R + +F+ E +
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF1_DROPS (V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.675e-28
Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  228 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 563
            LI++I DEDT  GFLL GVG ++  R  N+++VD  T V  +ED FK F  ++DI I+LI+Q  A +IR ++D++  P+PA+LEIPSKDHPYD + DS+L R + +F+ E +
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTPVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_NEUCR (V-type proton ATPase subunit F OS=Neurospora crassa GN=vma-7 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 3
Query:  201 AQIATKSSALIAMIADEDTVTGFLLAGVGNVDLR--RKTNYLIVDSKTTVKAIEDAFKEFTT-KEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 548
            +Q   +    +A+I DED+VTG LLAG+G+V      + N+L+VD+KT   AIE AF  FTT ++DI IVLI+Q++A+ IR  VD++    P +LEIPSKDHPYDP  DSVL RV+ LF
Sbjct:    4 SQADARDRQFLAVIGDEDSVTGLLLAGIGHVTAPPDSQKNFLVVDNKTDNAAIEAAFDRFTTERKDIGIVLINQHIADRIRHRVDTHTAAFPTVLEIPSKDHPYDPEKDSVLRRVRRLF 122          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_YEAST (V-type proton ATPase subunit F OS=Saccharomyces cerevisiae GN=VMA7 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.327e-25
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  228 LIAMIADEDTVTGFLLAGVGNV--DLRRKTNYLIVDSKTTVKAIEDAFKEFTT-KEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 548
            LIA+IADEDT TG LLAG+G +  + + K  ++  + KTT + I D F  FT  ++DIAI+LI+Q++A  IR  VDS+    PAILEIPSKDHPYDP  DSVL RV+ LF
Sbjct:    7 LIAVIADEDTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEERDDIAILLINQHIAENIRARVDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKLF 116          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF_SCHPO (V-type proton ATPase subunit F OS=Schizosaccharomyces pombe GN=vma7 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.242e-23
Identity = 54/111 (48.65%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  216 KSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTK-EDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNL 545
            +   L+++I D+DTVTG LLAG G V+     N+ I+  KTT + I +AF ++TTK +DIAIVLI+Q+ A  IR  ++++ +  PA+LEIPSKD PYDP  DS+L RV+ +
Sbjct:    7 RERTLVSVIGDDDTVTGMLLAGTGQVNENGDKNFFIITQKTTDEQIAEAFDDYTTKRKDIAIVLINQFAAERIRDRIENHVQAFPAVLEIPSKDDPYDPEKDSILRRVRKI 117          
BLAST of DR908452 vs. ExPASy Swiss-Prot
Match: VATF2_DROME (Probable V-type proton ATPase subunit F 2 OS=Drosophila melanogaster GN=CG1076 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  336 TTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS 551
            TT K IE+ FK+F  + DI I+LI+Q  A+MIR  VD++N  +P +LEIPSK HPYD + DS+L R + + +
Sbjct:   52 TTPKQIEECFKKFLRRPDIVIILINQVYADMIRPTVDAHNLAVPTVLEIPSKQHPYDSSRDSILKRAQRVIT 123          
The following BLAST results are available for this feature:
BLAST of DR908452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF1_DROME1.282e-2849.11V-type proton ATPase subunit F 1 OS=Drosophila mel... [more]
VATF1_DROPS1.675e-2849.11V-type proton ATPase subunit F 1 OS=Drosophila pse... [more]
VATF_NEUCR4.560e-2652.10V-type proton ATPase subunit F OS=Neurospora crass... [more]
VATF_YEAST1.327e-2555.45V-type proton ATPase subunit F OS=Saccharomyces ce... [more]
VATF_SCHPO1.242e-2348.65V-type proton ATPase subunit F OS=Schizosaccharomy... [more]
VATF2_DROME1.797e-1450.00Probable V-type proton ATPase subunit F 2 OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16580 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908452 ID=DR908452; Name=DR908452; organism=Citrus sinensis; type=EST; length=638bp
GTGACATTCACTCATACACACCTACGCCCACGCTGCCGCTGCCGTCACTT
CCGTTCAAGTGTGCCACTCTGCAACTTCTAGTCGTTCTCGATTTGCTTCC
TCGTTCCAGCTGCTGTCGTCTCTGCCATCGAAGCCTCCGGCGTCGTTCGC
CGTCGTCAGCCACACAAGTTCAATCAATTTAAATTTAAATGGCTGGCAGA
GCTCAAATCGCTACCAAGAGTTCGGCCCTTATTGCCATGATTGCAGATGA
GGATACTGTAACTGGATTTTTGCTGGCTGGAGTGGGTAATGTTGATTTGC
GGAGAAAAACAAACTATCTTATTGTTGATTCAAAAACTACGGTGAAAGCA
ATTGAAGATGCATTCAAAGAGTTTACAACAAAGGAAGACATTGCCATTGT
TTTAATCAGTCAATACGTTGCGAACATGATAAGGTTCTTAGTTGACAGCT
ACAACAAGCCAATTCCAGCAATATTGGAGATTCCTTCTAAGGACCATCCG
TATGACCCTGCTCATGATTCAGTTCTTTCACGAGTGAAAAACCTTTTCTC
TGCAGAGTCCGTTGCATCTGGAAGGCGTTGATGATTCCACAATGTCCATT
TATCAAATTGTAGCATGATACTGATAAAGACTGCTAGT
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