DR908449

Overview
NameDR908449
Unique NameDR908449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 2
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 322
            GLG   S+EV  AIR A+  AK ++I VRRG   WG   GR HTVP K+ GK  SV+  ++PAP G G+    V K +L  AGI DV++   G T+T  NF  A F+ L
Sbjct:   99 GLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTILSLAGIADVWSMCSGQTQTTINFAGAVFDAL 207          
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 331
            G G     +V  AI+ AI  AK++++ VRRG   W       H++P +V G  GSV V + PAP+G G+V   + KKVL+ AGI D +T +RG T+T  NF KATF  L +T
Sbjct:   85 GFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNALKET 196          
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 2
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 331
            GL      +V  AIR AI  AKL++I V RG   W    G  HTVP +V G+ GS+ V ++PAPRG G+ A    KKVL+ AG  DV++ + G T+T  NF  AT++ L  T
Sbjct:   89 GLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINFALATYKALEST 200          
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 2
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 328
            G+G+  S ++  A   AI  AKL++I V RG   W    G PH++P +V GK GSV V + PAP+G GIVA    KK+ + AGI DV+  S G TKT  N V A F+ L K
Sbjct:   97 GVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDALKK 207          
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   26 EVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 370
            +V  AI+ AI +AKL++I  P+  G W ++ G  +++  + TGK GSV V + PAPRG G+ AA   + VL+ AG++D +T   G+T+T  N  KAT+  L       TP+  R+ R
Sbjct:   90 QVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNALRNASESRTPEHTRQVR 206          
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 2
Query:    2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTY 334
            G+G   +K++  AI  A   A L+V P++ G   W  +  + H+VP KV GK GSV + ++PAPRG G+VA    +++L+ AG+ D +T+++GST T  +  KA  ECL +T+
Sbjct:  104 GIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTF 216          
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 2
Query:   26 EVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 349
            +V +AI+ AI +AKL++I V RG   W +  G  +++     GK GSVTV ++PAP+G G+ AA     +L+ AG++D +T S G+T+T  N  KAT+  L       TP
Sbjct:   96 QVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAKATYNALRNASQSRTP 205          
The following BLAST results are available for this feature:
BLAST of DR908449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_METST2.052e-1846.7930S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_METB62.268e-1743.7530S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_UNCMA2.508e-1644.6430S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_NANEQ2.508e-1645.9530S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_NATPD3.276e-1639.3230S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_CENSY3.276e-1639.8230S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]
RS5_HALWD2.123e-1540.0030S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16577 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908449 ID=DR908449; Name=DR908449; organism=Citrus sinensis; type=EST; length=639bp
GGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTGCCATCCGTGGCG
CTATCATATTGGCGAAGCTGTCGGTGATTCCGGTGAGAAGGGGTTACTGG
GGTAACAAGATCGGGAGGCCACACACCGTGCCGTGTAAGGTGACCGGTAA
GTGTGGCAGTGTCACCGTGAGGATGGTTCCGGCCCCACGTGGTGCCGGAA
TTGTGGCGGCTAGGGTTCCAAAGAAGGTGCTGCAGTTTGCTGGTATTGAC
GATGTTTTCACATCTTCTCGTGGGTCGACCAAGACTCTTGGAAACTTTGT
CAAGGCAACCTTTGAGTGTTTGTTGAAGACATATGGCTTCCTTACACCTG
ATTTCTGGAGGGAGACTCGTTTTGTGAAATCTCCATACCAAGAGTACACA
GATCTTTTGACGCCAAAGCCCATCAGCAAGGCAGTCATCACAGAAGTTGA
TCAAGTTGAACCTTAAGCTACTTAAGGCTGCATGGAGAGGAGAGCATTAG
AATGAAAGGCATTTTGGTTGACTTTATAGTATAGCTTTGTTTGTTACAGA
CTTTTCTGTTTTTCATTTCTGCAGGACTAGTATGTTGCTATTTGGAGACA
CAATTGTTTGCTTTAAAGTTTTGCAATCAGAGTTTTCTT
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