DR908449
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18 Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 2 Query: 2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 322 GLG S+EV AIR A+ AK ++I VRRG WG GR HTVP K+ GK SV+ ++PAP G G+ V K +L AGI DV++ G T+T NF A F+ L Sbjct: 99 GLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTILSLAGIADVWSMCSGQTQTTINFAGAVFDAL 207
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17 Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 2 Query: 2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 331 G G +V AI+ AI AK++++ VRRG W H++P +V G GSV V + PAP+G G+V + KKVL+ AGI D +T +RG T+T NF KATF L +T Sbjct: 85 GFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNALKET 196
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16 Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 2 Query: 2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 331 GL +V AIR AI AKL++I V RG W G HTVP +V G+ GS+ V ++PAPRG G+ A KKVL+ AG DV++ + G T+T NF AT++ L T Sbjct: 89 GLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINFALATYKALEST 200
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16 Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 2 Query: 2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 328 G+G+ S ++ A AI AKL++I V RG W G PH++P +V GK GSV V + PAP+G GIVA KK+ + AGI DV+ S G TKT N V A F+ L K Sbjct: 97 GVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDALKK 207
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16 Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 2 Query: 26 EVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 370 +V AI+ AI +AKL++I P+ G W ++ G +++ + TGK GSV V + PAPRG G+ AA + VL+ AG++D +T G+T+T N KAT+ L TP+ R+ R Sbjct: 90 QVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNALRNASESRTPEHTRQVR 206
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16 Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 2 Query: 2 GLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTY 334 G+G +K++ AI A A L+V P++ G W + + H+VP KV GK GSV + ++PAPRG G+VA +++L+ AG+ D +T+++GST T + KA ECL +T+ Sbjct: 104 GIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTF 216
BLAST of DR908449 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15 Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 2 Query: 26 EVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 349 +V +AI+ AI +AKL++I V RG W + G +++ GK GSVTV ++PAP+G G+ AA +L+ AG++D +T S G+T+T N KAT+ L TP Sbjct: 96 QVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAKATYNALRNASQSRTP 205 The following BLAST results are available for this feature:
BLAST of DR908449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DR908449 ID=DR908449; Name=DR908449; organism=Citrus sinensis; type=EST; length=639bpback to top |