DR908442

Overview
NameDR908442
Unique NameDR908442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 7.252e-72
Identity = 134/208 (64.42%), Postives = 162/208 (77.88%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSK-SKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ W++ D KYHFS QF AD IAMN TDFII STFQEIAGSKD  GQYESHTAFT+PGL RVV GIDV DPKFNI +PGAD SVYF Y EK++RLT  HPEIEELLY+  +N EH+  + D+ KPI+F+MARLD VKNLTG  E Y K+ +LR LVNLV+VG   D  K SKD EE A++KKM+ L++ Y+L GQ RWI++Q +R++
Sbjct:  448 SDIYWEKFDKKYHFSSQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTMPGLYRVVHGIDVFDPKFNIVSPGADTSVYFSYKEKEKRLTTLHPEIEELLYSSVENEEHLCIIKDKNKPILFTMARLDNVKNLTGFVEWYAKSPKLRELVNLVVVGG--DRRKESKDLEEQAQMKKMYELIDTYKLNGQFRWISSQMNRVR 653          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.616e-71
Identity = 136/208 (65.38%), Postives = 162/208 (77.88%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSK-SKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+   + D KYHFS QF AD IAMN TDFII STFQEIAGSKD  GQYESH AFT+PGL RVV GIDV DPKFNI +PGAD ++YFPY+EK++RLT FHPEIE+LL++  +N EH+  L DR KPIIF+MARLD VKNLTGL E Y KN RLR LVNLV+VG   D  K SKD EE AE+KKM+ L++ + L GQ RWI++Q +R++
Sbjct:  446 SDIYLNKFDEKYHFSAQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHMAFTMPGLYRVVHGIDVFDPKFNIVSPGADVNLYFPYSEKEKRLTTFHPEIEDLLFSDVENEEHLCVLKDRNKPIIFTMARLDRVKNLTGLVEWYAKNPRLRELVNLVVVGG--DRRKESKDLEEQAEMKKMYELIKTHNLNGQFRWISSQMNRVR 651          
BLAST of DR908442 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 3.599e-71
Identity = 133/207 (64.25%), Postives = 159/207 (76.81%), Query Frame = 1
Query:    1 SDVKWKELDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTECYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLK 621
            SD+ WK+ +  YHFSCQF AD IAMN  DFII STFQEIAG+K+  GQYESH AFT+PGL RVV GIDV DPKFNI +PGAD S+YFP+TE Q+RLT  H EIEELL++  +N EH   L D+KKPIIFSMARLD VKNLTGL E YG+N RL+ LVNLV+V       +SKD+EE AE KKM  L+E+Y L G +RWI+AQ +R++
Sbjct:  451 SDLYWKKFEDHYHFSCQFTADLIAMNHADFIITSTFQEIAGNKETVGQYESHMAFTMPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPFTESQKRLTSLHLEIEELLFSDVENTEHKFVLKDKKKPIIFSMARLDHVKNLTGLVELYGRNPRLQELVNLVVVCGDHG-KESKDKEEQAEFKKMFNLIEQYNLNGHIRWISAQMNRVR 656          
The following BLAST results are available for this feature:
BLAST of DR908442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS1_DAUCA7.252e-7264.42Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUS2_SOLTU1.616e-7165.38Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]
SUS3_ORYSJ3.599e-7164.25Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16570 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908442 ID=DR908442; Name=DR908442; organism=Citrus sinensis; type=EST; length=639bp
TCAGATGTGAAATGGAAGGAACTGGACCCAAAATACCACTTCTCTTGCCA
ATTCATAGCCGATACAATTGCAATGAATGCAACAGATTTCATCATAGCAA
GCACATTCCAGGAGATTGCTGGAAGCAAAGACAGACCCGGACAGTATGAG
AGCCATACCGCATTTACTCTCCCAGGGCTATGTAGAGTTGTCAAAGGCAT
CGATGTCTTGGACCCGAAATTCAACATTGCTGCTCCTGGGGCTGATCAAT
CAGTCTATTTCCCTTACACAGAGAAACAGAGACGACTCACAAAATTTCAT
CCCGAGATTGAGGAATTGCTGTACAATAAAGAAGACAATAATGAACACAT
TGGATATCTTGCAGACAGAAAGAAACCAATTATCTTCTCGATGGCAAGGC
TTGATGTTGTAAAGAACCTCACAGGACTAACCGAGTGTTATGGAAAGAAC
AAGAGGCTGAGAAACTTGGTAAATCTTGTTATAGTTGGGGCCTTCTTTGA
TCCTTCCAAATCAAAAGATAGAGAAGAAACTGCTGAAATAAAAAAGATGC
ACGCATTGATGGAAAAATACCAACTTAAGGGACAAATGAGATGGATAGCA
GCACAGAGTGACAGGCTCAAAACGGAGAGCTCTACCGCT
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