DR908435 | Citrus Genome Database

Overview


Name	DR908435
Unique Name	DR908435
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	641

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.746e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 1.095e-26
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQ
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQ 41

HSP 3 Score: 63.1586 bits (152), Expect = 1.095e-26
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LIFAGKQLE+GRTL+DYNIQKESTLHLVLRLR
Sbjct:   37 PPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLR 74

HSP 4 Score: 119.783 bits (299), Expect = 1.212e-26
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 IALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.617e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 117.087 bits (292), Expect = 7.856e-26
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 IALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 75.485 bits (184), Expect = 3.379e-25
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQ
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQ 41

HSP 4 Score: 60.4622 bits (145), Expect = 3.379e-25
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LIFA KQLE+GRTL+DYNIQKESTLHLVLRLR
Sbjct:   37 PPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.885e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 63.5438 bits (153), Expect = 1.193e-21
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQ
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQ 41

HSP 3 Score: 60.4622 bits (145), Expect = 1.193e-21
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI+AGKQLED +TLADYNIQKESTLH+VLRLR
Sbjct:   37 PVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLR 74

HSP 4 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            IT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   13 ITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.870e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 61.2326 bits (147), Expect = 7.535e-21
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LIFAGKQLED +T+ADYNIQKESTLH+VLRLR
Sbjct:   37 PVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLR 74

HSP 3 Score: 60.077 bits (144), Expect = 7.535e-21
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQ
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQ 41

HSP 4 Score: 100.138 bits (248), Expect = 9.938e-21
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            IT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   13 ITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.106e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1

Query:  226 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 414
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 118.627 bits (296), Expect = 2.700e-26
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 186
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    2 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 3 Score: 64.6994 bits (156), Expect = 1.553e-21
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   26 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 4 Score: 58.9214 bits (141), Expect = 1.553e-21
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 1

Query:  454 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQ
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQ 30

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  199 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 86.2705 bits (212), Expect = 1.485e-16
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   13 IEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 53.9138 bits (128), Expect = 6.873e-14
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1

Query:  427 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQ
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQ 41

HSP 4 Score: 43.8986 bits (102), Expect = 6.873e-14
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI+AGKQL D +T  DYNI+  S LHLVL LR
Sbjct:   37 PPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.214e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  199 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   13 IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 53.5286 bits (127), Expect = 8.933e-14
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1

Query:  427 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQ
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 41

HSP 4 Score: 43.8986 bits (102), Expect = 8.933e-14
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI+AGKQL D +T  DYNI+  S LHLVL LR
Sbjct:   37 PPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.214e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  199 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   13 IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 53.5286 bits (127), Expect = 8.933e-14
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1

Query:  427 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQ
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 41

HSP 4 Score: 43.8986 bits (102), Expect = 8.933e-14
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI+AGKQL D +T  DYNI+  S LHLVL LR
Sbjct:   37 PPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.214e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  199 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 420
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 192
            I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   13 IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 53.5286 bits (127), Expect = 8.933e-14
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1

Query:  427 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQ
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 41

HSP 4 Score: 43.8986 bits (102), Expect = 8.933e-14
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LI+AGKQL D +T  DYNI+  S LHLVL LR
Sbjct:   37 PPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALR 74

[Close]

BLAST of DR908435 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.214e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 1

Query:  193 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 429
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 2 Score: 84.7297 bits (208), Expect = 4.321e-16
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1

Query:    1 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 201
            I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:   13 IEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 3 Score: 53.1434 bits (126), Expect = 1.161e-13
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1

Query:  421 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 543
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQ
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQ 41

HSP 4 Score: 43.8986 bits (102), Expect = 1.161e-13
Identity = 21/38 (55.26%), Postives = 25/38 (65.79%), Query Frame = 3

Query:  528 PT*SAELIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 641
            P     LIF+GKQ+ D +T ADY +Q  S LHLVL LR
Sbjct:   37 PPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALR 74

The following BLAST results are available for this feature:

BLAST of DR908435 vs. ExPASy Swiss-Prot

BLAST of DR908435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
UBIQ_LEIMA	1.746e-33	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	5.617e-32	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	2.885e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	1.870e-27	76.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	7.106e-27	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_DESAN	1.695e-20	64.86	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB2_ORYSJ	2.214e-20	63.51	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_ORYSJ	2.214e-20	63.51	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
RUB1_ARATH	2.214e-20	63.51	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DROME	2.214e-20	58.23	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_16563 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_B10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908435 ID=DR908435; Name=DR908435; organism=Citrus sinensis; type=EST; length=641bp
ATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAA
GATCCAGGACAAGGAAGGGATTCCACCGGACCAGCAGAGGCTGATCTTCG
CAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAATATCCAG
AAGGAATCAACACTTCACCTCGTGCTTCGTCTCCGTGGGGGCATGCAGAT
ATTCGTCAAAACCCTAACGGGAAAGACGATTACCCTCGAGGTCGAGAGCT
CCGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATT
CCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGG
AAGGACGCTCGCGGATTACAACATTCAGAAGGAATCAACTCTTCATCTGG
TGTTGCGTCTGAGGGGTGGCATGCAGATTTTTGTCAAGACATTGACCGGG
AAGACGATTACCCTGGAGGTGGAGAGTTCGGATACCATTGACAATGTCAA
GGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGCAGAGCTCAT
CTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTGCTGATTACAACA
TTCAGAAGGAGTCCACTCTTCATCTCGTCCTCCGTCTCCGT