EY659575

Overview
NameEY659575
Unique NameEY659575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659575_ssr362 microsatellite EY659575_ssr362:362..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:625..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  162 IWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  162 IWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  161 IWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  162 IWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  161 IWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
[Close]
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  162 IWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
The following BLAST results are available for this feature:
BLAST of EY659575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2C_SOLLC8.072e-1752.08Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC8.072e-1752.08Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL8.072e-1752.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_SOLLC8.072e-1752.08Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_TOBAC8.072e-1752.08Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP8.072e-1752.08Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL8.072e-1752.08Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_TOBAC8.072e-1752.08Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC1.054e-1652.08Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB25_PETSP1.054e-1652.08Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659575 ID=EY659575; Name=EY659575; organism=Citrus sinensis; type=EST; length=489bp
TCCTTTCTCAATAACAACGTTGATATGGATCGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
TTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCT
CTCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGT
TGGCACTATTGTTATTATTATTATTATATGCGCCTATCTTGTAAAAAGAA
TTATAACATTTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAG
TCATTTCATCTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
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