EY659575

Overview
NameEY659575
Unique NameEY659575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659575_ssr362 microsatellite EY659575_ssr362:362..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:625..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQRNSELDPEK------RLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 283
            S+  ++  +VL++G +E  R     P +      RLYPGG F DPLGLA DP+    L++ EIK+ RLAM   LGF  QA+VTG+GP+ NW  HL DP
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPF-DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  161 IWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVN 252          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  164 IWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 255          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            IW  +V+++G IE  R         LDP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A H++DP+
Sbjct:  159 IWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 283
            SI   + ++V+++G  E  R    SE  LD    LYPGG F DPLGLA DP+  A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N   HL+DP
Sbjct:  142 SIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  169 IWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G IE  R          DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL+N   HL+DP++
Sbjct:  162 IWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++  IK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  162 IWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
The following BLAST results are available for this feature:
BLAST of EY659575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_EUGGR1.054e-1646.94Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2F_SOLLC1.377e-1651.04Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.377e-1651.04Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB25_NICPL1.377e-1652.08Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_PEA1.377e-1651.04Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_LEMGI1.377e-1652.63Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.798e-1651.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY3.068e-1650.00Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB27_TOBAC3.068e-1652.08Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC3.068e-1651.04Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659575 ID=EY659575; Name=EY659575; organism=Citrus sinensis; type=EST; length=489bp
TCCTTTCTCAATAACAACGTTGATATGGATCGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
TTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCT
CTCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGT
TGGCACTATTGTTATTATTATTATTATATGCGCCTATCTTGTAAAAAGAA
TTATAACATTTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAG
TCATTTCATCTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
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