EY659575

Overview
NameEY659575
Unique NameEY659575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659575_ssr362 microsatellite EY659575_ssr362:362..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:625..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  151 IWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 242          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            IW  +V+++G IE  R         LDP   LYPG  F DPLGLA DPE KA L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   45 IWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  157 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 248          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G IE  R         +DP   LYPGG F DPLGLA DPE  A +++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF-DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  101 IWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  150 IWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 283
            +I   + ++V+++G IE  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP
Sbjct:  147 NIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  173 IWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +VL++G +E  R +       +DP   LYPGG F DPLGLA DPE  A L++ E K+ RLAM +  GF +QA+VTGKGPL N A HL DP++
Sbjct:  162 IWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            IW  +V+++G++E  R         LDP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:  160 IWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250          
The following BLAST results are available for this feature:
BLAST of EY659575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_SOYBN3.068e-1650.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PINSY3.068e-1652.63Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_MAIZE3.068e-1650.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB29_MAIZE4.006e-1651.04Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA5.232e-1650.00Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA5.232e-1650.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO6.834e-1648.98Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PINSY6.834e-1650.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_PETSP6.834e-1651.04Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_GOSHI6.834e-1649.47Chlorophyll a-b binding protein 151, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659575 ID=EY659575; Name=EY659575; organism=Citrus sinensis; type=EST; length=489bp
TCCTTTCTCAATAACAACGTTGATATGGATCGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
TTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCT
CTCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGT
TGGCACTATTGTTATTATTATTATTATATGCGCCTATCTTGTAAAAAGAA
TTATAACATTTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAG
TCATTTCATCTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
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