EY659575

Overview
NameEY659575
Unique NameEY659575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659575_ssr362 microsatellite EY659575_ssr362:362..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:625..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            IW  +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N + H++DP+
Sbjct:  132 IWASQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPV 222          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            IW  +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N + H++DP+
Sbjct:  160 IWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE    L++ E+K  RLAM++  GF VQA+VTGKGPL N A H++DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVN 251          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA D E  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  159 IWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            IW  +V+++G++E  R         LDP   LYPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  160 IWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    8 SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 283
            +I   + ++V+++G +E  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N   HL++P
Sbjct:  165 NIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A +++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  173 IWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 289
            IW  +V+++G +E  R +   P    E  LYPGG F DPL    DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   18 IWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQRNSEL---DPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 283
            IW  +V+++G +E  R +     + E  +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N + HL+DP
Sbjct:  160 IWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
BLAST of EY659575 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 2
Query:   23 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 286
            IW  +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  160 IWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250          
The following BLAST results are available for this feature:
BLAST of EY659575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB25_SOLLC8.925e-1648.42Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC8.925e-1648.42Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_MAIZE8.925e-1648.96Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU8.925e-1651.04Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB215_PEA1.166e-1548.42Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_DUNSA1.522e-1547.96Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY1.522e-1548.96Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA1.522e-1550.00Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB23_POLMU1.988e-1549.45Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB26_PETSP2.597e-1548.42Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659575 ID=EY659575; Name=EY659575; organism=Citrus sinensis; type=EST; length=489bp
TCCTTTCTCAATAACAACGTTGATATGGATCGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
TTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCT
CTCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGT
TGGCACTATTGTTATTATTATTATTATATGCGCCTATCTTGTAAAAAGAA
TTATAACATTTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAG
TCATTTCATCTTTGCAGAAAAAAAAAAAAAAAAAAAAAA
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