DR908405

Overview
NameDR908405
Unique NameDR908405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 9.701e-52
Identity = 99/181 (54.70%), Postives = 126/181 (69.61%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            M+TI S++ + IP  +K  + A+V+ + G RG L R FKHL LD ++       KR LK++ WFG++K  AA+RT  SH+ N+I GVT G++YKMR VYAHFPIN     NN  IEIRNFLGEK +R+V+M  GVTV+ S   KDEL+++GNDIE VS SAALI Q   VKNKDIR FL G
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYM-----PDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDG 176          

HSP 2 Score: 27.7202 bits (60), Expect = 9.701e-52
Identity = 10/15 (66.67%), Postives = 15/15 (100.00%), Query Frame = 2
Query:  581 EFLDGIYVSEKSTIL 625
            +FLDG+YVSEK+T++
Sbjct:  172 KFLDGLYVSEKTTVV 186          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_SPOFR (60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.265e-51
Identity = 98/181 (54.14%), Postives = 129/181 (71.27%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MK I++++ + IP+G+ V + ++++ V+GPRG L R+FKHL +D  ++       R LK++ WFGS+K  AA+RT  SHV N+I GVTKG++YKMR VYAHFPIN      N  IEIRNFLGEK +R+V M  GVTV+ S K KDEL+++GN +E VS SAALI Q   VKNKDIR FL G
Sbjct:    1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDG 176          

HSP 2 Score: 27.7202 bits (60), Expect = 1.265e-51
Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  581 EFLDGIYVSEKSTILGEE 634
            +FLDG+YVSEK+T+  +E
Sbjct:  172 KFLDGLYVSEKTTVEVDE 189          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.450e-51
Identity = 105/192 (54.69%), Postives = 131/192 (68.23%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMGSMSVRKAPYLE 629
            MKTILS++T+DIPD V V +  + + V+GPRG L R+F H+NL+  L+  ++   +KL++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +R+V M  GV    S   KDELVL+GNDIELVS SAALI Q   VKNKDIR FL G     K   +E
Sbjct:    1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVE 189          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.501e-48
Identity = 95/194 (48.97%), Postives = 134/194 (69.07%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMGSMSVRKAPYLEKN 635
            MK I SS  + IP+ V V +  + ++V GPRG LS+ F H ++D +L+     GK++L +D WFG+RK  A I+T  S + N+ITGVTKGY YKMRFVYAHFPIN ++ +  + +EIRNF GEK VR++++LDG+T  R++K KDE+VL GN +EL+S+S A I  +  +K KD+R FL G + V +   LE N
Sbjct:    1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDG-IYVSERNVLESN 188          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.553e-45
Identity = 90/181 (49.72%), Postives = 124/181 (68.51%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MK I S++T+  P+GV   +  +++ V GPRG + +DF+HL+++      E  GK  L++  WFG RK  AAIRT  SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNFLGEK VR+V + +GV    S   KDE+V++GND++ VS++AA I Q   VK KDIR FL G
Sbjct:    1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEM-----ERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDG 176          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.245e-44
Identity = 91/183 (49.73%), Postives = 128/183 (69.95%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MK I + + ++IP+GV V I +++++V GPRG L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIR FL G
Sbjct:    1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDG 178          

HSP 2 Score: 23.8682 bits (50), Expect = 2.245e-44
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  581 EFLDGIYVSEKSTIL 625
            +FLDGIYVS K  I+
Sbjct:  174 KFLDGIYVSHKGFIV 188          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 3.813e-44
Identity = 90/183 (49.18%), Postives = 128/183 (69.95%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            MK I + + +++P+GV V I +++++V GPRG L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIR FL G
Sbjct:    1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDG 178          

HSP 2 Score: 23.483 bits (49), Expect = 3.813e-44
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVS K  I
Sbjct:  174 KFLDGIYVSHKGFI 187          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.434e-43
Identity = 87/180 (48.33%), Postives = 121/180 (67.22%), Query Frame = 3
Query:   57 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            + I   ET+ IP+GV V I A+++ V+GPRG L ++ + ++++     +       +K   W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++++GN +E VS+SAA I Q C+V+NKDIR FL G
Sbjct:    3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGNT------IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176          

HSP 2 Score: 25.0238 bits (53), Expect = 1.434e-43
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSE+  I
Sbjct:  172 KFLDGIYVSERGNI 185          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.146e-43
Identity = 87/180 (48.33%), Postives = 118/180 (65.56%), Query Frame = 3
Query:   57 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRNFLMG 596
            + I   ET+ IP GV V I A+ + V GPRG L ++ +H++++     +       +K   W GSRK +A IR+  S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++L+GN +E VS+SAA I Q C+V+NKDIR FL G
Sbjct:    3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNT------IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176          

HSP 2 Score: 25.0238 bits (53), Expect = 9.146e-43
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  581 EFLDGIYVSEKSTI 622
            +FLDGIYVSE+  I
Sbjct:  172 KFLDGIYVSERGNI 185          
BLAST of DR908405 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 69/131 (52.67%), Postives = 92/131 (70.23%), Query Frame = 3
Query:   54 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDM 446
            MK + S++T+D PDGV   +  +V+ V GPRG L RDF+HL+++      E  GK +L++  WFG RK  AAIRT  SH+ N+I GVTKG+RYKMR VYAHFPIN ++ +  + +EIRNFLGEK VR V +
Sbjct:    1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
The following BLAST results are available for this feature:
BLAST of DR908405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL9_DROME9.701e-5254.7060S ribosomal protein L9 OS=Drosophila melanogaste... [more]
RL9_SPOFR1.265e-5154.1460S ribosomal protein L9 OS=Spodoptera frugiperda ... [more]
RL9_ICTPU1.450e-5154.6960S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_DICDI1.501e-4848.9760S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL1.553e-4549.7260S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_YEAST2.245e-4449.7360S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST3.813e-4449.1860S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL9B_SCHPO1.434e-4348.3360S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO9.146e-4348.3360S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL9_HAECO1.611e-3452.6760S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16533 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908405 ID=DR908405; Name=DR908405; organism=Citrus sinensis; type=EST; length=648bp
CTAGCTTAAGCGTAGGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGG
AAAATGAAGACAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGT
GAAAGTCAAGATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTA
AGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACT
GACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTC
TCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATC
TCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTAC
GCTCACTTTCCCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGA
GATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTG
ATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTT
GATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCA
GAAATGCCATGTGAAGAACAAGGACATTAGGAATTTCTTGATGGGATCTA
TGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATGATGATTAGCTTT
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