DR908369

Overview
NameDR908369
Unique NameDR908369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908369 vs. ExPASy Swiss-Prot
Match: VA0D2_DROME (Probable V-type proton ATPase subunit d 2 OS=Drosophila melanogaster GN=CG4624 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.275e-46
Identity = 80/189 (42.33%), Postives = 121/189 (64.02%), Query Frame = 3 
Query:    3 NIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTL-KLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFC 566
            N   GYLEA+ RG++ G+L  +DY NL QCE+L+D+ + +  T+YG     E S   +  ++E+C   +L+ +Y ++   +TEPL+TF+E+I Y  MIDNV L+V G  + R ++ LL  CHPLG FD +  + VA N  EL+  VL+DTP+A +    +  E L  +++EI+R  LY+AYLE FY +C
Sbjct:    6 NTEYGYLEALTRGFKNGMLKHSDYLNLTQCESLEDVMISIQGTDYGLIFGGEQSA-PSVEVIERCLRDRLLQQYYYIRSHSTEPLTTFMEFIRYPFMIDNVALLVAGLNNHRSMKRLLRMCHPLGEFDQLGAIEVASNSAELFDAVLIDTPIARFVPRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYC 193

HSP 2 Score: 41.5874 bits (96), Expect = 3.275e-46
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:  566 SELGGATAEIMSDLLAFEADRRAVNITINS 655
            S+LGG TA +M++LL+FEADRR + I +N+
Sbjct:  194 SQLGGNTANVMTNLLSFEADRRTITIAVNA 223
The following BLAST results are available for this feature:
BLAST of DR908369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VA0D2_DROME3.275e-4642.33Probable V-type proton ATPase subunit d 2 OS=Droso... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16497 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908369 ID=DR908369; Name=DR908369; organism=Citrus sinensis; type=EST; length=655bp
TTAACATACACGGCGGATACTTGGAGGCGATCGTGAGGGGCTACCGTGCG
GGGCTCTTGACGGCCGCCGATTACAACAATTTGTGCCAGTGCGAAACACT
TGACGACATCAAGATGCACCTCTCCGCCACCGAATATGGTCCTTACCTCC
AAAACGAACCTTCCCCATTGCATACTACAACAATTGTGGAGAAATGCACT
CTGAAACTGGTTGATGAGTATAAGCACATGCTGTGCCAAGCCACTGAGCC
CCTGTCAACATTTTTAGAGTATATCACATATGGTCACATGATAGACAATG
TTGTCTTGATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAAGAACTG
TTGGAGAAATGTCACCCTTTGGGCATGTTTGACAGCATTGCTACACTGGC
GGTTGCTCAGAACATGCGGGAGCTTTATAGATTGGTGCTTGTTGACACAC
CATTAGCACCATACTTTTCTGAATGTATCACATCAGAGGACTTGGATGAC
ATGAACATTGAAATAATGAGGAATACTCTCTACAAGGCATACCTAGAAGA
CTTTTACAAGTTTTGTCAGAACTGGGTGGTGCAACAGCTGAGATCATGTC
TGACCTTCTAGCTTTTGAGGCCGACAGAAGAGCTGTCAATATCACCATAA
ACAGC
back to top