DR908360

Overview
NameDR908360
Unique NameDR908360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 52/183 (28.42%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   27 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTK-GEIRKVC 557
            + TGR DG+ S A +++  LP    +++    +F    +    +V LLG H++G THC  ++ RLY      + DP+++P  V  +  KCP +      +   +N   +   +D ++Y+ I  ++G++ +D +LA D  T   V  +A   D F   F +A+  L     ++  K GEIR+ C
Sbjct:  143 IPTGRLDGKISSALLVD--LPSPKMTVAETAAKFDQRKLSLNDMVLLLGGHTIGVTHCSFIMDRLYNFQNTQKPDPSMDPKLVEELSAKCPKSSSTDGIISLDQNATSS-NTMDVSFYKEIKVSRGVLHIDQKLAIDDLTSKMVTDIANGND-FLVRFGQAMVNLGSVRVISKPKDGEIRRSC 321          
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 51/189 (26.98%), Postives = 89/189 (47.09%), Query Frame = 3
Query:    6 LGGPYIPLKTGRRDG-RKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 569
            +GG    +K GRRD    S +      LP    ++  ++  F A G+    +VAL G+H++G+  CV    R+Y   +  L+          CP A         + + R TP   D +Y+  +++++GL+  D  L     T   V   ++S   F+++F  A+  + + +PLTG+ G+IR+ C   N
Sbjct:  140 MGGRGWSVKLGRRDSITASFSTANSGVLPPPTSTLDNLINLFRANGLSPRDMVALSGAHTIGQARCVTFRSRIYNSTNIDLS--FALSRRRSCPAATGSGDNNAAILDLR-TPEKFDGSYFMQLVNHRGLLTSDQVLFNGGSTDSIVVSYSRSVQAFYRDFVAAMIKMGDISPLTGSNGQIRRSCRRPN 325          
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 50/178 (28.09%), Postives = 83/178 (46.63%), Query Frame = 3
Query:   36 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 569
            GR+D R +        L   N++++  L +FAA G +   +VALLGSH++G   C  L       +   +NP  V  +   C   +    A   V  D  TP   D  Y+ ++++++GL+  D++L     T   V++   +   F  +F+ A+  +S   P  G   EIR VC+  N
Sbjct:  180 GRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARCPLLC------ISTFINPARVSTLNCNCSGTV---NATGLVGLDP-TPTTWDQRYFSDVVNDQGLLFSDNELLKGNTTNAAVRRYRDAMGAFLTDFAAAMVKMSNLPPSPGVALEIRDVCSRVN 347          
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 55/195 (28.21%), Postives = 94/195 (48.21%), Query Frame = 3
Query:    9 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKK---MAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 569
            GG    +  GR DGR S+A  +   LP  +DS++   + FAA  ++   LV L+G H++G   C  +  R        + DP+++P  VP +L +CP           V  D G+    D ++ R +  ++ ++  D  L  D  TR  +++   + +    F  EF +++  +S     TG+ GEIR+VC+  N
Sbjct:  144 GGQRWEVPLGRLDGRISQASDVN--LPGPSDSVAKQKQDFAAKTLNTLDLVTLVGGHTIGTAGCGLVRGRFVNFNGTGQPDPSIDPSFVPLILAQCPQ-----NGGTRVELDEGSVDKFDTSFLRKVTSSRVVLQSDLVLWKDPETRAIIERLLGLRRPSLRFGTEFGKSMVKMSLIEVKTGSDGEIRRVCSAIN 331          
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PER47_ARATH (Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 53/187 (28.34%), Postives = 83/187 (44.39%), Query Frame = 3
Query:    9 GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 569
            GGPY  +  GR DG++S+ E     LP    + S +++ F   G     +VAL G+H++G   C     RL    D +L+      +   C       +     RND       DN Y+  +    G++  D  L    RTR  V   A +Q  FF +F +A+  +S  +   G++GE+R+ C   N
Sbjct:  136 GGPYYDIPKGRFDGKRSKIEDTRN-LPSPFLNASQLIQTFGQRGFTPQDVVALSGAHTLGVARCSSFKARLTVP-DSSLDSTFANTLSKTCSAGDNAEQPFDATRND------FDNAYFNALQMKSGVLFSDQTLFNTPRTRNLVNGYALNQAKFFFDFQQAMRKMSNLDVKLGSQGEVRQNCRSIN 314          
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 50/188 (26.60%), Postives = 80/188 (42.55%), Query Frame = 3
Query:    6 LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 569
            LGG    +  GR D R +        LP   D+++V +++F+        +VAL G+H+VG   C          V  + N +    +   C   + D    Q       TP + D  YY N+  N+G+M  D  L  D  T  +V   +   + F  +F+ A+  + +  P  G + EIR VC+  N
Sbjct:  182 LGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARC--------STVCTSGNVNPAAQLQCNCSATLTDSDLQQLDT----TPTMFDKVYYDNLNSNQGIMFSDQVLTGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVN 357          
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 49/188 (26.06%), Postives = 81/188 (43.09%), Query Frame = 3
Query:    6 LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 569
            LGG    +  GR D   +        LP  +D+++V +++F+        +VAL G+H+VG   C          V  + N +    +   C   + D    Q       TP V D  YY N+ +N+G+M  D  L  +  T  +V   + +   F ++F+ A+  +    P  G + EIR VC+  N
Sbjct:  181 LGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARC--------STVCTSGNVNPAAQLQCNCSATLTDSDLQQLDT----TPAVFDKVYYDNLNNNQGIMFSDQVLTGNTTTAGFVTTYSNNVTVFLEDFAAAMIKMGNLPPSAGAQLEIRDVCSRVN 356          
BLAST of DR908360 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 50/188 (26.60%), Postives = 79/188 (42.02%), Query Frame = 3
Query:    6 LGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 569
            LGG    +  GR D R +        LP   D+++V +++F         +VAL G+H+VG   C          V  + N +    +   C   + D    Q       TP + D  YY N+ +N+G+M  D  L  D  T  +V   +     F  +F+ A+  + +  P  G + EIR VC+  N
Sbjct:  181 LGGQTYNVALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLREMVALAGAHTVGFARC--------STVCTSGNVNPAAQLQCNCSATLTDSDLQQLDT----TPTMFDKVYYDNLNNNQGIMFSDQVLTGDATTAGFVTDYSNDVSVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVN 356          
The following BLAST results are available for this feature:
BLAST of DR908360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER60_ARATH2.751e-1328.42Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER68_ARATH3.593e-1326.98Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PERA_IPOBA4.693e-1328.09Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER69_ARATH6.129e-1328.21Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PER47_ARATH1.783e-1228.34Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=... [more]
PER1_SOLLC1.972e-1126.60Suberization-associated anionic peroxidase 1 OS=So... [more]
PER2_SOLLC3.363e-1126.06Suberization-associated anionic peroxidase 2 OS=So... [more]
PERX_SOLTU9.785e-1126.60Suberization-associated anionic peroxidase OS=Sola... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16488 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908360 ID=DR908360; Name=DR908360; organism=Citrus sinensis; type=EST; length=658bp
TTGCGCTTGGAGGCCCTTACATTCCTCTCAAGACAGGAAGAAGAGATGGT
AGAAAAAGCAGAGCAGAGATACTTGAGCAGTATCTCCCAGATCACAACGA
CAGCATGTCTGTTGTTCTTGAGAGGTTTGCAGCCATTGGCATTGACGCCC
CTGGACTTGTTGCTCTGCTAGGATCTCACAGTGTTGGCAGAACTCATTGT
GTGAAGCTGGTGCACCGTCTGTACCCAGAAGTTGACCCTGCACTGAACCC
TGACCATGTTCCGCATATGCTCCATAAGTGTCCTGATGCAATCCCAGACC
CCAAGGCTGTTCAGTATGTGAGGAATGACCGTGGCACACCCATGGTGCTG
GACAACAACTACTATAGGAACATATTGGACAACAAGGGCTTGATGATGGT
TGATCATCAGCTAGCCACCGACAAGAGGACAAGACCTTATGTTAAGAAGA
TGGCCAAGAGTCAAGACTACTTCTTCAAGGAATTTTCAAGAGCCATTACT
CTCCTTTCTGAGAACAACCCTCTCACAGGTACAAAGGGTGAGATCCGAAA
GGTTTGCAATCTTGCCAACAAGCTCCACGACAAGTCCTAGCTAGCTAACA
GCTGTATTAGCTACACAAGTTAATAGCTCCAAATTTTTCTTCCTTGTTTC
TTCTATGA
back to top