EY659530

Overview
NameEY659530
Unique NameEY659530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_CAEEL (40S ribosomal protein S25 OS=Caenorhabditis elegans GN=rps-25 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.950e-24
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDDPV 405
            VRDKLNN VLFD+A+YDKL KEV +YKLITPSVVSERLKV  SLA+  L+EL+ +GL+K VV HH QV+YTR TK  D +
Sbjct:   36 VRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.648e-19
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKG 393
            ++K+NN VLFD+A+YDKLL E P +KLITPS++S+RL+++GSLAR+A+ EL  +G I+ V  H +Q IYTR T G
Sbjct:   34 KEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATHG 108          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.671e-19
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRIT 387
            ++K+NN VLFDK++YDKLL E P YKLITPSV+S+RL++ GSLARKA+ +L  +G I+ V  H +Q IYTR T
Sbjct:   34 KEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRAT 106          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.795e-19
Identity = 41/73 (56.16%), Postives = 60/73 (82.19%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRIT 387
            ++K+NN VLFD+A+YDKLL E P +KLITPS++S+R++++GSLAR+A+ EL  +G+I+ V  H +Q IYTR T
Sbjct:   34 KEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRAT 106          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18
Identity = 41/73 (56.16%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRIT 387
            ++K+NN VLFD+ +YDKLL E P +KLITPS++S+R++++GSLAR+A+ EL  +GLI+ V  H +Q IYTR T
Sbjct:   34 KEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRAT 106          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_DICDI (40S ribosomal protein S25 OS=Dictyostelium discoideum GN=rps25 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 41/71 (57.75%), Postives = 59/71 (83.10%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTR 381
            R+KLNN +LFDK +Y KLLKE+P+ K+IT +VVSER+K +GSLAR+A++EL  +GLIKQ+++ H   +YT+
Sbjct:   38 REKLNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTK 108          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.542e-17
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRIT 387
            ++K+NN VLFD+A+YDKL+ E P +KLITPS++S+RL+++GSLARKA+ +L  +G I+ V  H +Q I TR T
Sbjct:   33 KEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 105          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25A_YEAST (40S ribosomal protein S25-A OS=Saccharomyces cerevisiae GN=RPS25A PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGD 396
            ++D+  + V+ D+  YD++LKEVP+Y+ ++ SV+ +RLK+ GSLAR AL  L K+G+IK + +H  Q IYTR T  +
Sbjct:   32 MKDRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRATASE 108          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_NEUCR (40S ribosomal protein S25 OS=Neurospora crassa GN=rps-25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.085e-14
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 399
            V+DK  + V+ DK++ DKL K+V SY+L+T + + +RLK++GSLAR+ L++L ++G IKQVV H    IYTR    D+
Sbjct:   20 VKDKAQHAVILDKSTSDKLYKDVQSYRLVTVATLVDRLKINGSLARRCLKDLEEKGQIKQVVGHSKMKIYTRAIGADE 97          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25B_YEAST (40S ribosomal protein S25-B OS=Saccharomyces cerevisiae GN=RPS25B PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTR 381
            ++D+  + V+ D+  YD++LKEVP+Y+ ++ SV+ +RLK+ GSLAR AL  L K+G+IK + +H  Q IYTR
Sbjct:   32 MKDRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103          
The following BLAST results are available for this feature:
BLAST of EY659530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_CAEEL4.950e-2468.7540S ribosomal protein S25 OS=Caenorhabditis elegan... [more]
RS253_ARATH1.648e-1957.3340S ribosomal protein S25-3 OS=Arabidopsis thalian... [more]
RS25_SOLLC3.671e-1960.2740S ribosomal protein S25 OS=Solanum lycopersicum ... [more]
RS254_ARATH4.795e-1956.1640S ribosomal protein S25-4 OS=Arabidopsis thalian... [more]
RS252_ARATH1.068e-1856.1640S ribosomal protein S25-2 OS=Arabidopsis thalian... [more]
RS25_DICDI5.301e-1857.7540S ribosomal protein S25 OS=Dictyostelium discoid... [more]
RS251_ARATH1.542e-1754.7940S ribosomal protein S25-1 OS=Arabidopsis thalian... [more]
RS25A_YEAST9.358e-1545.4540S ribosomal protein S25-A OS=Saccharomyces cerev... [more]
RS25_NEUCR2.085e-1447.4440S ribosomal protein S25 OS=Neurospora crassa GN=... [more]
RS25B_YEAST3.556e-1447.2240S ribosomal protein S25-B OS=Saccharomyces cerev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659530 ID=EY659530; Name=EY659530; organism=Citrus sinensis; type=EST; length=474bp
GGTTTTCGGTCCGNATTACCGCCTCGACCCACGCGTCCGGTGATTTTTTA
ACATGGGTCCCAAAAAAGAGCGCAAGGAGGTTCCAAACAGCCCTCCAAAA
CACCTAAAAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAG
TGGTCAAAAGGAAAAGTTCGTGACAAGTTAAACAATCAAGTTCTCTTCGA
CAAGGCCTCATATGACAAGCTGTTAAAAGAAGTTCCATCATACAAATTAA
TCACTCCATCAGTTGTCAGTGAACGATTGAAGGTCCATGGATCATTAGCA
CGTAAAGCTTTGGAAGAACTCCGTAAACAAGGTCTAATAAAGCAAGTCGT
CAGGCATCATGCTCAGGTTATCTACACTAGAATAACTAAAGGAGATGACC
CCGTGTAATGAAAAACAAATTTGTAAAACTTTTTTAATACATATTTTTAA
GTTAAAAAAAAAAAAAAAAAAAAA
back to top