EY659530

Overview
NameEY659530
Unique NameEY659530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_AMACR (40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRIT 387
            ++K+NN VLFD A++DKLL E    K++T + +SER +++GSLAR+A+ EL  +G IK V  H +  IYTR T
Sbjct:   33 KEKVNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRST 105          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_CANGA (40S ribosomal protein S25 OS=Candida glabrata GN=RPS25 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 32/71 (45.07%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTR 381
            +DK  + V+ D+  +D++LKEVP+Y+ ++ SV+ +RLK+ GS+AR AL  L ++G+IK + +H  Q IYTR
Sbjct:   33 KDKAQHAVILDQEKFDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLEREGIIKPISKHSKQAIYTR 103          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_ASHGO (40S ribosomal protein S25 OS=Ashbya gossypii GN=RPS25 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.932e-13
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGD 396
            +DK  + V+ D+   D++LKEVP+Y+ ++ SV+ +RLK+ GS+AR AL  L  +G+IK + +H  Q IYTR T  +
Sbjct:   33 KDKAQHAVILDQDKLDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLETEGIIKPISKHSKQAIYTRATASE 108          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25A_SCHPO (40S ribosomal protein S25-A OS=Schizosaccharomyces pombe GN=rps25a PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.932e-13
Identity = 33/73 (45.21%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRI 384
            V+DK  +  +FDK+  D++ KEVP++K I+ SV+ +R+K++GSLAR A+ +L ++G+I++V +H  Q IYTR+
Sbjct:   12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRV 84          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25_LEIIN (40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  169 RDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITK 390
            R+ L N V+FDK +YDKL  EVP YKLITPS++S+RLK+  S+A   L++L ++ LI+ V       +YTRI +
Sbjct:   33 REALQNAVMFDKETYDKLRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCSSKTRVYTRIVQ 106          
BLAST of EY659530 vs. ExPASy Swiss-Prot
Match: RS25B_SCHPO (40S ribosomal protein S25-B OS=Schizosaccharomyces pombe GN=rps25b PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 33/72 (45.83%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  166 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTR 381
            V+DK  +  +FDK+  D++ KEVP++K I+ SV+ +R+K++GSLAR A+ +L ++G+I++V +H  Q IYTR
Sbjct:   12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83          
The following BLAST results are available for this feature:
BLAST of EY659530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_AMACR6.066e-1449.3240S ribosomal protein S25 OS=Amaranthus cruentus G... [more]
RS25_CANGA1.765e-1345.0740S ribosomal protein S25 OS=Candida glabrata GN=R... [more]
RS25_ASHGO3.932e-1343.4240S ribosomal protein S25 OS=Ashbya gossypii GN=RP... [more]
RS25A_SCHPO3.932e-1345.2140S ribosomal protein S25-A OS=Schizosaccharomyces... [more]
RS25_LEIIN8.759e-1348.6540S ribosomal protein S25 OS=Leishmania infantum G... [more]
RS25B_SCHPO8.759e-1345.8340S ribosomal protein S25-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659530 ID=EY659530; Name=EY659530; organism=Citrus sinensis; type=EST; length=474bp
GGTTTTCGGTCCGNATTACCGCCTCGACCCACGCGTCCGGTGATTTTTTA
ACATGGGTCCCAAAAAAGAGCGCAAGGAGGTTCCAAACAGCCCTCCAAAA
CACCTAAAAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAG
TGGTCAAAAGGAAAAGTTCGTGACAAGTTAAACAATCAAGTTCTCTTCGA
CAAGGCCTCATATGACAAGCTGTTAAAAGAAGTTCCATCATACAAATTAA
TCACTCCATCAGTTGTCAGTGAACGATTGAAGGTCCATGGATCATTAGCA
CGTAAAGCTTTGGAAGAACTCCGTAAACAAGGTCTAATAAAGCAAGTCGT
CAGGCATCATGCTCAGGTTATCTACACTAGAATAACTAAAGGAGATGACC
CCGTGTAATGAAAAACAAATTTGTAAAACTTTTTTAATACATATTTTTAA
GTTAAAAAAAAAAAAAAAAAAAAA
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