DR908246

Overview
NameDR908246
Unique NameDR908246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.696e-77
Identity = 135/225 (60.00%), Postives = 167/225 (74.22%), Query Frame = 2
Query:   20 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            G++  IIS  MF+ +L++RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYC+ RE G   S YC     +PC    KYYGRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C
Sbjct:   83 GDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYC 306          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 6.443e-77
Identity = 130/230 (56.52%), Postives = 165/230 (71.74%), Query Frame = 2
Query:    5 TAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            ++G G  +  IIS  +F+ +L +RND+ C A+ FYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYCF  E    +  YC+P   +PC    KYYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+  +D V +RIGF+  +C
Sbjct:   69 SSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYC 298          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.099e-76
Identity = 136/230 (59.13%), Postives = 169/230 (73.48%), Query Frame = 2
Query:    5 TAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            T   GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E GA +S+YC P+  +PC  GK YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C
Sbjct:   73 TPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGA-TSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYC 301          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.099e-76
Identity = 134/223 (60.09%), Postives = 163/223 (73.09%), Query Frame = 2
Query:   26 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            +G I+ R +FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +E    S DYC P+  +PC    KYYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+  +D V NRIGF+  +C
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPS-DYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYC 310          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.177e-76
Identity = 128/231 (55.41%), Postives = 165/231 (71.43%), Query Frame = 2
Query:    5 TAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYC--DPNYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC    KYYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C
Sbjct:   72 SGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYC 302          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.304e-76
Identity = 134/225 (59.56%), Postives = 164/225 (72.89%), Query Frame = 2
Query:   20 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            G +  I+SR  F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF +E GA SSDYC P+  +PC    +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C
Sbjct:   23 GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGA-SSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYC 246          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 283.108 bits (723), Expect = 9.304e-76
Identity = 135/230 (58.70%), Postives = 167/230 (72.61%), Query Frame = 2
Query:    5 TAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            T   GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E GA +S+YC P+  +PC  GK YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C
Sbjct:   70 TPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGA-TSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYC 298          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.877e-75
Identity = 132/225 (58.67%), Postives = 163/225 (72.44%), Query Frame = 2
Query:   20 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            G +  IIS   F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF +E GAA+ DYC P+  +PC    +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C
Sbjct:   23 GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAA-DYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYC 246          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.344e-74
Identity = 128/225 (56.89%), Postives = 165/225 (73.33%), Query Frame = 2
Query:   17 GGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP-NYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            GG++G+++   +F+ +L+YRND RC    FYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYCF  E       YC P ++PC    KYYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C
Sbjct:   77 GGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEV-YCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYC 300          
BLAST of DR908246 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 2.993e-74
Identity = 132/232 (56.90%), Postives = 164/232 (70.69%), Query Frame = 2
Query:    8 AGDGGE-LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVG-AASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFC 682
            +G GG  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E G AA  DYC  +  +PC    KYYGRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C
Sbjct:   74 SGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYC 305          
The following BLAST results are available for this feature:
BLAST of DR908246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI3_TOBAC1.696e-7760.00Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_ORYSJ6.443e-7756.52Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE1.099e-7659.13Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_ORYSJ1.099e-7660.09Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ4.177e-7655.41Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_HORVU9.304e-7659.5626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU9.304e-7658.7026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE7.877e-7558.67Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIX_PEA1.344e-7456.89Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI12_ORYSJ2.993e-7456.90Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16374 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908246 ID=DR908246; Name=DR908246; organism=Citrus sinensis; type=EST; length=684bp
CGGGACGGCTGGCGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGA
TGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGA
TGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCT
GGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGTGCTGC
GTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATG
GCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGA
GAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGA
TCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGC
CACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCA
GCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAA
TATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTAC
GTAACCGTATTGGGTTCTTTACCACTTTCTGTGG
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