DR908243

Overview
NameDR908243
Unique NameDR908243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908243 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 2 
Query:  146 QILVPIANGSEEMEAVMIIDILRRAKANVVVASVEDKPEILASRQIKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPVMCNKLSDQSE--IENRVVVDGNLITSRGPG 601
            ++L+  A+G E++E +  +  ++     V VAS + + +I       +  D+  DE     +D +VLPGG    +    +EK V + KK  E  +P  +IC  P +++   G+LKG+K T+   + + + +     I+  VVVDGN ++SR PG
Sbjct:    2 KVLILSADGFEDLELIYPLHRIKEEGHEVYVASFQ-RGKITGKHGYTVNVDLAFDEVDPDEFDALVLPGGRA-PEIVRLNEKAVAITKKMFEDGKPVASICHGPQILISA-GVLKGRKGTSTVTIRDDVKNAGAEWIDAEVVVDGNWVSSRHPG 152
The following BLAST results are available for this feature:
BLAST of DR908243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PFPI_PYRKO1.617e-1129.87Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16371 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908243 ID=DR908243; Name=DR908243; organism=Citrus sinensis; type=EST; length=684bp
GTTTGCCATTGCACTTGTCGAGCAGTTGTATGGGAAAGAGAGAGCTGATG
AAGTTTCTGGGCCACTGGTAATGCGTGCAAATCATGGAGATGAATACACT
ATTGCTGAATTCAATCCAATTCAGTGGACATTTGACAATTCTCCCCAAAT
TCTTGTGCCTATTGCAAATGGTTCAGAGGAGATGGAAGCTGTTATGATAA
TTGATATTCTGCGACGAGCTAAAGCAAATGTTGTAGTTGCATCAGTTGAG
GATAAACCAGAAATTCTGGCTTCTCGTCAAATTAAATTAGTGGCAGATGT
GCTCATTGATGAGGCGGCTAAACTCTCGTATGATTTAATTGTCTTGCCAG
GTGGACTTGGTGGCGCTCAAGCATTTGCGAAGTCAGAGAAATTGGTGAAT
ATGCTAAAGAAGCAAAAGGAATCAAATAGACCTTACGGTGCTATATGTGC
ATCCCCAGCTTTAGTGTTGGAGCCCCATGGCTTACTCAAGGGTAAAAAAG
CTACAGCTTTTCCTGTTATGTGCAACAAGCTGTCAGATCAGAGTGAAATC
GAAAACAGGGTTGTGGTTGATGGCAACCTCATCACCAGTAGAGGGCCAGG
AACTTCTATGGAGTTTGCACTGGCAATTGTGGAGAAGTTTTTTGGCCGCA
CAAGCACTTGAGCTTGCAAAGATAATGCTTTTCA
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